NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40412.1 Public Mus musculus 8 Nfix 23 108 98 CCDS HistoryNCBI Gene:18032Re-query CCDS DB by CCDS ID:40412.1Re-query CCDS DB by GeneID:18032See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076715.12 ENSMUSP00000076005.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076715.12Link to Ensembl Protein Viewer:ENSMUSP00000076005.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076715Re-query CCDS DB by Protein ID:ENSMUSP00000076005
Original member Current member NCBI NM_010906.4 NP_035036.1 Accepted alive Link to Nucleotide Sequence:NM_010906.4Link to Protein Sequence:NP_035036.1Re-query CCDS DB by Nucleotide ID:NM_010906Re-query CCDS DB by Protein ID:NP_035036Link to BLAST:NP_035036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035036.1 400 P70257-2 400 100% 0 0

Chromosomal Locations for CCDS 40412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84713786 84713857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84721643 84721818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84726469 84726605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727124 84727244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727605 84727679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84727905 84727967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84771784 84772315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84799998 84800024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGTACTCCCCGTACTGCCTCACCCAGGATGAGTTCCACCCGTTTATCGAGGCGCTGCTGCCTCACGTCC
GAGCCTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCACGAGAAGCG
GATGTCAAAGGACGAGGAGCGCGCAGTGAAGGACGAGCTGCTGGGCGAGAAGCCTGAGATCAAGCAGAAG
TGGGCATCCCGGCTGTTGGCCAAGCTGCGCAAAGACATCCGGCCCGAGTTCCGCGAGGACTTTGTGCTAA
CCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTTTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGAT
TGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAAGGGATC
CCTTTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCCCAGTGCTCGAACCCCGGCCTGTGTGTCC
AGCCACATCACATTGGAGTCACAATCAAAGAACTGGACCTTTATCTGGCTTACTTTGTCCACACTCCGGA
ATCCGGACAATCAGATAGTTCAAACCAGCAAGGAGATGCGGACATCAAACCACTGCCCAACGGGCACTTA
AGTTTCCAGGACTGCTTTGTGACGTCTGGGGTCTGGAATGTGACAGAGCTGGTGAGAGTATCACAGACTC
CAGTTGCGACTGCATCAGGGCCCAACTTCTCACTGGCGGACCTGGAGAGCCCCAGCTACTACAACATAAA
TCAAGTGACCCTGGGAAGGCGGTCCATCACCTCCCCTCCTTCCACCAGCAGCACCAAGCGCCCCAAGTCC
ATCGACGACAGTGAGATGGAGAGTCCAGTAGATGATGTGTTCTATCCTGGGACAGGCCGCTCTCCGGCCG
CTGGCAGCAGCCAGTCTAGCGGATGGCCCAATGACGTGGATGCAGGGAGCCCCCGGGCCACGGCATCAGC
GCTGCACTTCCCTTCCACGTCCATCATCCAGCAGTCGAGCCCGTATTTCACACACCCAACCATCCGCTAC
CACCACCACCATGGGCAGGACTCGCTGAAGGAGTTTGTGCAGTTTGTGTGCTCTGACGGCTCGGGTCAGG
CCACCGGACAGCATTCACAACGACAGGCGCCTCCTCTGCCAACCGGTTTGTCAGCATCGGATCCCGGGAC
GGCAACTTTCTGA

Translation (400 aa):
MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQK
WASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGI
PLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESGQSDSSNQQGDADIKPLPNGHL
SFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKS
IDDSEMESPVDDVFYPGTGRSPAAGSSQSSGWPNDVDAGSPRATASALHFPSTSIIQQSSPYFTHPTIRY
HHHHGQDSLKEFVQFVCSDGSGQATGQHSQRQAPPLPTGLSASDPGTATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH