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Report for CCDS40410.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40410.2 Public Mus musculus 8 Trmt1 23 108 98 CCDS HistoryNCBI Gene:212528Re-query CCDS DB by CCDS ID:40410.2Re-query CCDS DB by GeneID:212528See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 40410.2
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 38 aa longer.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40410.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001974.10 ENSMUSP00000001974.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001974.10Link to Ensembl Protein Viewer:ENSMUSP00000001974.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001974Re-query CCDS DB by Protein ID:ENSMUSP00000001974
Original member Current member EBI ENSMUST00000109767.8 ENSMUSP00000105389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109767.8Link to Ensembl Protein Viewer:ENSMUSP00000105389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109767Re-query CCDS DB by Protein ID:ENSMUSP00000105389
Original member Current member NCBI NM_001164559.1 NP_001158031.1 Accepted alive Link to Nucleotide Sequence:NM_001164559.1Link to Protein Sequence:NP_001158031.1Re-query CCDS DB by Nucleotide ID:NM_001164559Re-query CCDS DB by Protein ID:NP_001158031Link to BLAST:NP_001158031.1
Original member Current member NCBI NM_198020.2 NP_932137.2 Accepted alive Link to Nucleotide Sequence:NM_198020.2Link to Protein Sequence:NP_932137.2Re-query CCDS DB by Nucleotide ID:NM_198020Re-query CCDS DB by Protein ID:NP_932137Link to BLAST:NP_932137.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158031.1 663 Q3TX08 663 99.6983% 0 2
NP_932137.2 663 Q3TX08 663 99.6983% 0 2

Chromosomal Locations for CCDS 40410.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84689652 84689908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84690517 84690572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84690811 84690947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84691252 84691439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84695222 84695337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84695428 84695540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84696827 84696975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697115 84697201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697269 84697338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697425 84697559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84697646 84697731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84698185 84698293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84698393 84698469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699139 84699258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699341 84699470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84699603 84699764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGTCCCTCGCGAGGACGATCCTGTGGCTAAGCCGTCCTCTCCGTCCGGCCCACAGCCTCTGTAGAGCTC
AGTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCCACCAGCGATGGAGAACGGCACCCGGTCCTGGGA
AGAGCGCCCACCCGCGGACCCGGTTGCGACTGTCACTGAGGGCGCCGCCAAAATCGTCTTTCCCAGTGCT
AACGAGGTTTTCTATAACCCGGTGCAGGAATTCAACCGGGACCTGACGTGTGCTGTGATCACAGAGTTTG
CTCGAATTCATCTTGGGGCCAAGGGAATCCAGATCAAGGTTCCAGGAGAGAAGGACTCAGAGAAAATAGC
TGTGGACTTGTCTGATCAAGAAGAGGAAACAGCTGGAAAGAATGAAAATCTGGCCCCAGGGGACTGGCCA
CGGACTGCTGCAGTGGGTGAGATCTGTGAGGAAGGTCTACGAGTGCTGGAAGGCCTGGCAGCTTCCGGTC
TGCGCTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCAGTCTGTGGTTGCCAATGATGCCTCTGCCCG
GGCTGTAGAGCTTATGCACAGAAATGTGGAGCTCAATGGTGTGGCACATCTTGTTCAGCCCAACCAGGCA
GATGCCCGGATGCTGATGTACCAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCT
ATGGCAGCCCCGCCCCCTTCCTGGATGCAGCAGTGCAGGCTGTGAGTGATGGAGGACTTCTGTGTGTCAC
CTGCACAGACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATGCTACAGCAAGTATGGGGCCATGGCC
CTCAAGAGCCGAGCCTGCCATGAAATGGCCCTGCGGATTGTGCTGCACAGCCTGGACCTGCACGCCAACT
GCTACCAGCGCTATATCGTGCCGCTGCTCAGCATCAGTGCTGACTTCTATATCCGGGTCTTTGTACGTGT
TTTCACAGGCCAGGCCAAGGTTAAGTCCTCAGCCAGCAAACAGGCCCTGGTGTTCCAGTGTGTGGGTTGT
GGAGCCTTCTACCTGCAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAG
CCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACACCAGCTTGGGGGCCCCATGTG
GGCAGAGCCCATCCATGACCTGGACTTTGTGGGCCGAGTTCTTGACGCAGTGACCACGAATCCTGGCCGC
TTCCACACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGTTACTGAGGAACTTCCTGATGTCCCTCTCT
ACTACACACTGGACCAACTGAGCAGCACTATCCACTGCAACACACCCCGCCTTCTGCAGCTTCGGTCAGC
TCTCCTTCATGCTGGTTTCCGAGTCTCTCTCTCCCATGCTTGTAAGAATGCAGTGAAGACAGATGCTCCC
CCTGAGGCCCTCTGGGACATCATGCGTTGCTGGGAAAAGGAATGTCCAGTGAAACGGGAGCGGCTGTCTG
AAAGCAGTCCAGCATTCCGAATTCTTGCTGTGGAGCCCAGGCTGAAGGCCAACTTCAACATCCGGGAAGA
CGCCAACCCCAGCTCCCGCCAGCGAGGACTTAAGCGCTTCCAGGCCAATCCAGAAGCCAACTGGGGTCCC
CGGCCCCGTGCCCGGCCAGGGGGCAAGGCAGCAAGTGAAGATCTAGCAGGGAGGCGGAGGCTGCTACAGA
ATAAGAGGAAGGAGCCAGCTGAGGACCCGGCCCAGCGTGCAGCTCGCCTTAAGACATTTCCTTGCAAACG
ATTCAAAGAGGGTACCTGTCAACTAGGGGACCAGTGCTGTTATTCACACAGTCCTGCAGCTCCTGTGGCC
TCTGGTGATATCCCCATCGAAGAATGTCCAGAGACTACCACCAAGATCTCCCCTGGACCAAAGGCTGCTG
CTGGGGGTATTCCTGGGCCAGGTGTAGACTGA

Translation (663 aa):
MSLARTILWLSRPLRPAHSLCRAQFMERKAQKPPSPPAMENGTRSWEERPPADPVATVTEGAAKIVFPSA
NEVFYNPVQEFNRDLTCAVITEFARIHLGAKGIQIKVPGEKDSEKIAVDLSDQEEETAGKNENLAPGDWP
RTAAVGEICEEGLRVLEGLAASGLRSIRFALEVPGLQSVVANDASARAVELMHRNVELNGVAHLVQPNQA
DARMLMYQHQKAPERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKYGAMA
LKSRACHEMALRIVLHSLDLHANCYQRYIVPLLSISADFYIRVFVRVFTGQAKVKSSASKQALVFQCVGC
GAFYLQRLGKASGDPGGRIKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLDAVTTNPGR
FHTSMRIQGVLSVVTEELPDVPLYYTLDQLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAP
PEALWDIMRCWEKECPVKRERLSESSPAFRILAVEPRLKANFNIREDANPSSRQRGLKRFQANPEANWGP
RPRARPGGKAASEDLAGRRRLLQNKRKEPAEDPAQRAARLKTFPCKRFKEGTCQLGDQCCYSHSPAAPVA
SGDIPIEECPETTTKISPGPKAAAGGIPGPGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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