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Report for CCDS40385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40385.1 Public Mus musculus 8 Nxnl1 23 108 98 CCDS HistoryNCBI Gene:234404Re-query CCDS DB by CCDS ID:40385.1Re-query CCDS DB by GeneID:234404See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048243.6 ENSMUSP00000039294.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048243.6Link to Ensembl Protein Viewer:ENSMUSP00000039294.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048243Re-query CCDS DB by Protein ID:ENSMUSP00000039294
Original member Current member EBI ENSMUST00000163659.2 ENSMUSP00000127094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163659.2Link to Ensembl Protein Viewer:ENSMUSP00000127094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163659Re-query CCDS DB by Protein ID:ENSMUSP00000127094
Original member NCBI NM_145598.2 NP_663573.1 Updated not alive Link to Nucleotide Sequence:NM_145598.2Link to Protein Sequence:NP_663573.1Re-query CCDS DB by Nucleotide ID:NM_145598Re-query CCDS DB by Protein ID:NP_663573
Current member NCBI NM_145598.3 NP_663573.1 Accepted alive Link to Nucleotide Sequence:NM_145598.3Link to Protein Sequence:NP_663573.1Re-query CCDS DB by Nucleotide ID:NM_145598Re-query CCDS DB by Protein ID:NP_663573Link to BLAST:NP_663573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663573.1 217 Q8VC33 217 100% 0 0

Chromosomal Locations for CCDS 40385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71562609 71562936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71566254 71566579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCATCTCTCTTCTCTGGACGCATCTTGATCAGGAACAACAGCGACCAGGATGAAGTGGAGACAGAGG
CAGAGCTGAGCCGTAGGTTAGAGAATCGTCTGGTGTTGCTGTTCTTCGGCGCCGGCGCCTGTCCCCAGTG
CCAGGCCTTTGCCCCAGTCCTCAAAGACTTCTTCGTGCGGCTCACTGACGAGTTCTACGTGCTGCGGGCA
GCACAGCTGGCCCTGGTCTATGTGTCCCAGGACCCTACAGAGGAGCAACAGGACCTCTTCCTCAGGGACA
TGCCTGAAAAATGGCTCTTCCTGCCGTTCCATGATGAACTGAGGAGGGACCTCGGGCGCCAGTTCTCTGT
CCGTCAACTGCCAGCGGTTGTGGTACTTAAGCCTGGTGGGGACGTGCTGACAAGCGACGCCACGGAGGAG
ATCCAGCGTCTGGGACCCGCCTGCTTTGCCAACTGGCAGGAGGCCGCAGAGCTCCTGGACCGCAGCTTCC
TGCAACCGGAGGATTTGGATGAGCCTGCGCGGCGCAGCATCACCGAGCCTCTGCGCCGTCGCAAGTACCG
AGTAGACCGGGATGTCGGCCGGGAGCGGGGCCGAAACGGCCGCGACTCTGGTGACCCCCAGGGGGACGCG
GGTACAAGGGCGGAGCTCTGGTGA

Translation (217 aa):
MASLFSGRILIRNNSDQDEVETEAELSRRLENRLVLLFFGAGACPQCQAFAPVLKDFFVRLTDEFYVLRA
AQLALVYVSQDPTEEQQDLFLRDMPEKWLFLPFHDELRRDLGRQFSVRQLPAVVVLKPGGDVLTSDATEE
IQRLGPACFANWQEAAELLDRSFLQPEDLDEPARRSITEPLRRRKYRVDRDVGRERGRNGRDSGDPQGDA
GTRAELW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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