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Report for CCDS40374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40374.1 Public Mus musculus 8 Lsm4 23 108 98 CCDS HistoryNCBI Gene:50783Re-query CCDS DB by CCDS ID:40374.1Re-query CCDS DB by GeneID:50783See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034311.14 ENSMUSP00000034311.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034311.14Link to Ensembl Protein Viewer:ENSMUSP00000034311.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034311Re-query CCDS DB by Protein ID:ENSMUSP00000034311
Original member Current member NCBI NM_015816.4 NP_056631.2 Accepted alive Link to Nucleotide Sequence:NM_015816.4Link to Protein Sequence:NP_056631.2Re-query CCDS DB by Nucleotide ID:NM_015816Re-query CCDS DB by Protein ID:NP_056631Link to BLAST:NP_056631.2

Chromosomal Locations for CCDS 40374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70673455 70673457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70676555 70676596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70677778 70677876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70677954 70678134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70678360 70678451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGCTTCCCTTGTCGCTGCTGAAGACAGCGCAGAATCACCCCATGCTGGTGGAGCTGAAGAATGGGGAGA
CCTACAACGGGCATCTGGTGAGCTGTGACAACTGGATGAACATCAACCTCCGGGAGGTGATCTGCACGTC
GCGGGATGGTGACAAGTTCTGGAGGATGCCTGAGTGCTACATCCGTGGCAGCACCATCAAGTACCTGCGC
ATCCCTGATGAGATCATTGACATGGTGCGGGAGGAGGCCGCCAAGGGCCGAGGGCGAGGAGGACCGCAGC
AGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGGTGTGTTTGGTGGCCGGGGCCGGGG
TGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGGCGGCAGGCAGGCAAACAGTGA

Translation (138 aa):
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR
IPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIPGAGRGQPEKKPGRQAGKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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