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Report for CCDS40319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40319.1 Public Mus musculus 8 Mfhas1 23 108 98 CCDS HistoryNCBI Gene:52065Re-query CCDS DB by CCDS ID:40319.1Re-query CCDS DB by GeneID:52065See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037666.5 ENSMUSP00000044135.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037666.5Link to Ensembl Protein Viewer:ENSMUSP00000044135.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037666Re-query CCDS DB by Protein ID:ENSMUSP00000044135
Original member Current member NCBI NM_001081279.2 NP_001074748.1 Accepted alive Link to Nucleotide Sequence:NM_001081279.2Link to Protein Sequence:NP_001074748.1Re-query CCDS DB by Nucleotide ID:NM_001081279Re-query CCDS DB by Protein ID:NP_001074748Link to BLAST:NP_001074748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074748.1 1048 Q3V1N1 1048 100% 0 0

Chromosomal Locations for CCDS 40319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 35588373 35591358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 35664668 35664794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 35676730 35676763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGGCTGGCCAGGACAGTGGCAACCTGAAGACGGTGAGGCTGTGGCGGGACGCCGCCCTGAGAGCCAGGA
AGCTGCGGAGCAACCTGCGCCAGCTCACGCTCAGCTGCCCAGGGGCCGGAGGCGACCCACTGGAGTCCCC
CGACGCCCCCCAGCTGGTGCTGCCGGCCAACATCGGGGACATTGAGGTGCTGAACCTGGGGAACAACGGC
CTCGAGGATGTGCCTGAAGGTCTGGGGTCAGCTCTGGGCAGCCTTCGCGTCTTGGTCTTGCGCAGGAACC
GTTTTGCCCGGCTGCCCCCTGCGGTGGCGGAGCTAGGCCACCACCTTACCGAACTGGACGTCAGCCACAA
CCGGTTGACCATCCTGGGAGCCGAGGTGGTGAGCGCCCTGAGGGAGCTGCGCAAACTCAACCTGAGCCAC
AACCAGTTGCCAGCCCTGCCTGCCCAGCTGGGTGCCCTCGCCCACCTGGAGGAGCTGGATGTCAGCTTCA
ACCGGCTGGCGCATCTGCCAGATTCCTTCTCCTGCCTCAACCACCTTCGGACCCTTGACGTGGACCACAA
CCAGCTCACCGCCTTTCCCCAGCAGCTGCTGCAGCTGGCTGCCCTGGAGGAGCTCGACGTCTCCAGCAAC
CGGCTGCGAGGCCTACCTGAGGATATCAGTGCCCTGCGTGCCCTCAAGATCCTCTGGCTTAGCGGGGCCG
AGCTTGGCACGCTGCCCAGAGGCTTCTGCGAGCTGGCCAGTTTGGAGAGCCTCATGTTAGATAACAACGG
GCTCCAGGCTCTGCCCGACGAGTTCAGCCGTCTGCAGAGGCTCAAAATGCTCAACCTCTCTTCCAACCTC
TTCGAGGAGTTCCCTGCTGCGCTGCTGCCCCTGGCTGGTCTGGAGGAGCTCTATCTTAGTCGCAATCAGC
TCACCTCAGTGCCCTCTCTTATCGCCGGGCTGGGTCGGCTTCTCACCTTGTGGCTGGATAATAACCGCAT
CCGGTACCTGCCAGACTCCATTGTGGAGCTGACTGGCCTGGAGGAGCTGGTGCTCCAGGGCAACCAGATC
GCTGTGCTGCCGGACAACTTTGGCCAGCTCTCCCGGGTAGGCTTGTGGAAAATCAAGGACAACCCACTGA
TTCAGCCCCCTTACGAAGTCTGCATGAAGGGGATCCCTTACATCGCAGCCTACCAGAAGGAACTGGCGCA
TTCGCAGCCAGCCGTGCAGCCCCGGCTCAAGCTGCTCCTGATGGGCCACAAGGCTGCAGGAAAGACCCTG
CTTCGACATTGCCTCACCGAGGACAAAGTGGAGGGAGGGCAAGGTGGAGGGGACAAGGAGAAGAGCTACC
TACCTTTCCCTCCCCTTGGTAGTAAGGGCATCGAGGTGACCAGCTGGACAGCGGATGCTTCCCGGGGCTT
GCGGTTCATTGTGTATGACTTAGCCGGTGATGAAAGCTATGAGGTGATACAGCCCTTCTTCCTCTCCCCT
GGAGCCCTGTATGTGCTCGTGGTCAACTTGGCCACCTATGAACCTCGCTGCTTCCCTACCACCGTGGGCT
CCTTCTTGCATCGGGTGGGGGCCCGGGTGCCTCACGCTGTGGTGTGTATTGTAGGCACGCATGCGGACCT
GTGTGGGGAGCGGGAGCTTGAGGAGAAATGTCTGGACATTCACCGACAGATTGCCCTGCAGGAGAAGAAC
GATGCAGAGGGCCTTAGCCATCTAGCCAAGGTGGTGGATGAGGCCCTGGCTCGGGACTTCGAGCTGCGCT
CTGCCAGCCCTCACGCAGCCTACTACGGTGTTTCAGACAAGAACCTTCGGAGGCGCAAGGCCCATTTTCA
ATACTTGCTTAACCACCGGTTGCAGATCCTCTCTCCCGTGTTGCCCGTAAGCTGCCGGGACCCCCTCCAA
TTGCAACGCCTTCGAGACAAGCTGCTCTCTGTAGCTGAGCACCGAGAAATCTTTCCCAACTTACACCGAG
TCCTGCCTCGATCCTGGCAGGTACTGGAGGAACTGCACTTCCAGCCACCTCAGGCACAACGACTGTGGCT
GAGCTGGTGGGACTCTGCCCGCCTGGGCCTGCAGGCAGGTCTGACTGAGGACCGGCTCCAGAGTGCTCTT
TCCTACCTGCACGAGAGCGGCAAACTGCTCTATTTTGAGGATAGCCCAGCCCTCAAGGAGCATGTCTTCC
ACAACCTCACCCGCCTCATTGACATCCTCAATGTCTTTTTCCAGAGAGATGCTTCATTGCTGCTGCATAA
ACTGCTCTTAGGGACCAATGGAGAGGGGGAGGGGGAGGGGGAAAGTTTCCCCACTATAGCAGTGCCCAGC
CCGGGTCAGGACCCACTCCGGGCCACCCAGCTTCATCATTATGTGGAAGGCTTTTTGCTGCATGGGCTTC
TGCCAGCCCACATCATTCGGTTGCTGCTTAAGCCTCATGTCCAGGCCCAACAGGACTTGCAGCTCCTGCT
GGAGCTGTTGGAGAAGATGGGACTCTGTTACTGCCTCAATAAACCCAAAGGCAAGCCTTTGAATGGCTCC
GCGGCATGGTACAAGTTCCCATGCTACGTGCAGAATGAGGTGCCCCATGCAGAGGCCTGGATTAATGGCA
CCAACCTAGCCGGGCAGTCTTTTGTGGCTGAACAGTTACAGATCGAATATAGTTTTCCCTTCACCTTTCC
ACCTGGATTGTTCGCACGTTACAGTGTCCAGATCAACAGTCACGTGGTGCACAGGTCGGATGGGAAATTT
CAGATCTTTGCATATAGAGGGAAAGTTCCCGTGGTGGTGAGTTACAGACCTGCCAAGGGGGTTCTGCAGC
CCGACACCCTGTCCATTGCCAGCCATGCGTCACTACCAAATATATGGACCGCATGGCAAGCCATCACCCC
TTTGGTAGAGGAACTGAATGTCCTACTTCAGGAATGGCCTGGACTGCACTACACTGTGCACATCCTCTGT
TCTAAGTGCCTTAAGAGAGGGTCGCCAAATCCACACGCTTTCCCAGGGGAGTTGCTGAGCCAGCCCAGGC
CAGAAGGGGTGGCAGAGATCATCTGCCCCAAGAATGGCAGCGAGCGAGTGAATGTGGCTTTGGTTTACCC
ACCTACACCGACTGTGATCAGCCCTTGTTCCAAGAAGAACGTTGGTGAGAAGCACAGAAACCAGTGA

Translation (1048 aa):
MAGQDSGNLKTVRLWRDAALRARKLRSNLRQLTLSCPGAGGDPLESPDAPQLVLPANIGDIEVLNLGNNG
LEDVPEGLGSALGSLRVLVLRRNRFARLPPAVAELGHHLTELDVSHNRLTILGAEVVSALRELRKLNLSH
NQLPALPAQLGALAHLEELDVSFNRLAHLPDSFSCLNHLRTLDVDHNQLTAFPQQLLQLAALEELDVSSN
RLRGLPEDISALRALKILWLSGAELGTLPRGFCELASLESLMLDNNGLQALPDEFSRLQRLKMLNLSSNL
FEEFPAALLPLAGLEELYLSRNQLTSVPSLIAGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQI
AVLPDNFGQLSRVGLWKIKDNPLIQPPYEVCMKGIPYIAAYQKELAHSQPAVQPRLKLLLMGHKAAGKTL
LRHCLTEDKVEGGQGGGDKEKSYLPFPPLGSKGIEVTSWTADASRGLRFIVYDLAGDESYEVIQPFFLSP
GALYVLVVNLATYEPRCFPTTVGSFLHRVGARVPHAVVCIVGTHADLCGERELEEKCLDIHRQIALQEKN
DAEGLSHLAKVVDEALARDFELRSASPHAAYYGVSDKNLRRRKAHFQYLLNHRLQILSPVLPVSCRDPLQ
LQRLRDKLLSVAEHREIFPNLHRVLPRSWQVLEELHFQPPQAQRLWLSWWDSARLGLQAGLTEDRLQSAL
SYLHESGKLLYFEDSPALKEHVFHNLTRLIDILNVFFQRDASLLLHKLLLGTNGEGEGEGESFPTIAVPS
PGQDPLRATQLHHYVEGFLLHGLLPAHIIRLLLKPHVQAQQDLQLLLELLEKMGLCYCLNKPKGKPLNGS
AAWYKFPCYVQNEVPHAEAWINGTNLAGQSFVAEQLQIEYSFPFTFPPGLFARYSVQINSHVVHRSDGKF
QIFAYRGKVPVVVSYRPAKGVLQPDTLSIASHASLPNIWTAWQAITPLVEELNVLLQEWPGLHYTVHILC
SKCLKRGSPNPHAFPGELLSQPRPEGVAEIICPKNGSERVNVALVYPPTPTVISPCSKKNVGEKHRNQ


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