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Report for CCDS40187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40187.1 Public Mus musculus 7 Rplp2 23 108 98 CCDS HistoryNCBI Gene:67186Re-query CCDS DB by CCDS ID:40187.1Re-query CCDS DB by GeneID:67186See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084434.10 ENSMUSP00000081474.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084434.10Link to Ensembl Protein Viewer:ENSMUSP00000081474.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084434Re-query CCDS DB by Protein ID:ENSMUSP00000081474
Original member Current member EBI ENSMUST00000106003.1 ENSMUSP00000101625.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106003.1Link to Ensembl Protein Viewer:ENSMUSP00000101625.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106003Re-query CCDS DB by Protein ID:ENSMUSP00000101625
Original member Current member EBI ENSMUST00000106004.7 ENSMUSP00000101626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106004.7Link to Ensembl Protein Viewer:ENSMUSP00000101626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106004Re-query CCDS DB by Protein ID:ENSMUSP00000101626
Original member Current member NCBI NM_001360657.1 NP_001347586.1 Accepted alive Link to Nucleotide Sequence:NM_001360657.1Link to Protein Sequence:NP_001347586.1Re-query CCDS DB by Nucleotide ID:NM_001360657Re-query CCDS DB by Protein ID:NP_001347586Link to BLAST:NP_001347586.1
Original member Current member NCBI NM_026020.7 NP_080296.3 Accepted alive Link to Nucleotide Sequence:NM_026020.7Link to Protein Sequence:NP_080296.3Re-query CCDS DB by Nucleotide ID:NM_026020Re-query CCDS DB by Protein ID:NP_080296Link to BLAST:NP_080296.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347586.1 115 P99027 115 100% 0 0
NP_080296.3 115 P99027 115 100% 0 0

Chromosomal Locations for CCDS 40187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141447909 141448031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141448726 141448774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141451004 141451102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141451232 141451308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCGCTACGTCGCCTCTTACCTGCTGGCCGCCCTCGGGGGCAACTCCTCTCCTAGCGCCAAAGACATCA
AGAAAATACTAGACAGCGTGGGCATCGAAGCGGACGATGATCGGCTCAACAAGGTCATCAGTGAGCTGAA
TGGAAAGAACATTGAGGATGTCATCGCTCAGGGTGTTGGCAAGCTGGCCAGTGTGCCTGCTGGTGGGGCT
GTGGCTGTTTCTGCTGCCCCTGGCTCTGCAGCACCTGCTGCTGGTTCTGCCCCCGCTGCAGCAGAGGAGA
AGAAAGATGAGAAGAAGGAGGAGTCCGAGGAGTCGGATGACGACATGGGATTTGGCTTGTTTGATTAA

Translation (115 aa):
MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKLASVPAGGA
VAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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