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Report for CCDS40169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40169.1 Public Mus musculus 7 Pwwp2b 23 108 98 CCDS HistoryNCBI Gene:101631Re-query CCDS DB by CCDS ID:40169.1Re-query CCDS DB by GeneID:101631See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093993.4 ENSMUSP00000091529.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093993.4Link to Ensembl Protein Viewer:ENSMUSP00000091529.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093993Re-query CCDS DB by Protein ID:ENSMUSP00000091529
Original member Current member NCBI NM_001033206.2 NP_001028378.1 Accepted alive Link to Nucleotide Sequence:NM_001033206.2Link to Protein Sequence:NP_001028378.1Re-query CCDS DB by Nucleotide ID:NM_001033206Re-query CCDS DB by Protein ID:NP_001028378Link to BLAST:NP_001028378.1

Chromosomal Locations for CCDS 40169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139248519 139248643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139254770 139256160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139266472 139266485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGAGCCGCGGGCCGGCTGCCGGTTGCCGGTGCGGGTGGAACAGGTCGTCAACGGCGCGCTGGTGGTCA
CCGTGAGCTGTGGCGAGCGCAGCTTCGCCGGAATCCTGCTGGATTGCACGAAAAAGTCTGGCCTCTTTGG
CCTGTCTCCATCTACTCTACTGCCTCTGGCTGACAACTCCTCTGCCGTCAGCTGTCATGGCCAGGCTCCC
GAGGAGGGAACTGGAGAAGTGATGCAGCTAGAGACAGGACCTCTGCATCCTCACCACAAAGACCCTGAGA
AGGATCAGCCTCCCAAGACAGCTGTGTCTGAGCCGCCCCCACCTCTCATACCACCTGTGCCTGCCGGGAA
CCTGCCTCCCTTTCCACCATACTTTGAGGGTGCCCCCTTCCCTCACCCACTATGGCTGAGGAACACCTAC
CAGCAGTGGGTGCCGCAGCCCCCACCCAGGACCATCAAGCGGACCCGTCGGCGACTCTCCAGAAACCGGG
ATCCTGGAAGACTCATTCTTAGCACAATCCGCCTGCGGCCACGTCAGGTACTGTGTGAGAAGTGCAAGAG
TACTGTGAGTCCTCAAGAGGCCAGTCCCAGCCCCCTGAACACCCCCAAACCCCGCCGGAGGCTAGGCAGT
GGCCCTGACAGTGAACACCGAAAGCCAGAGGAACCAGAAGACAGCGCTGTCATAGCTACAGCTGCCCCGA
GGAGGAGCAAGAGGGAGAAGCGGGAAGAGGACAGGGTTGCTGGAGAGCGTGTTCCGAGAAGCCCAGTCAT
CAAGATCTCCTACAGCACACCACAGGGTAAGGGTGAGGTGGTCAAGATTCCATCCAGAGTGCATGGCTCC
GTGGAGCCCTTCTGCCCGCAACAGTCTCTACAGAATGGCAGCCAGGACTCAGAGGTATCAAGGGATGTGG
AGCCCAGGGGTGGTGGAGACCGACCACCCAGCGGGTCTTCAGCCTCCATCCCCAAGCTAAAGCTGACTCG
CCCAGTGCCTCCTATCTCTGACCTGCCACCTCCCAAAATCCGCCTGAAGCCCCACCGGCTGGGGGATGGA
GAGCATGAACCCCTTTACCGGGCTGAGCTGGTGGAGGAGCTGAACGGATGCCCACGAGGCCCGCTGGTCA
GCTCCCCTGCTCTCTTTGCCGATGGCTCTAGCCATGGGCTAGAGGACTTGTCTTCTGGAAGTTCTGGTGA
GGACGATGACCTCAAGAGGTTTCCCCAAGGTAAACATGGCCGTGATGGCTTGGCTTTTCTTGTGGACTGC
CCTGGGAGGAGAACAGATTGTACCAGTGAATCTGTGTGCAGCACGGACAGCCTGGATGAATTAAAATCAT
CTGGTTCAGAAGTGACATCTCCAGACACAGGAGACCTGTCATCTGGTGACAGTGCCTCTGTTCCTTCATC
TTCTGCTGACACTCGCCAGACAGTCCCTCCCCTCACGGTCAGGCTGCACACGCAGAGCGTCTCACGGTGT
GTGACTGAAGATGGAAGGACGGTGGCTGTAGGGGACATTGTGTGGGGTCACCGACAATGA

Translation (509 aa):
MEPRAGCRLPVRVEQVVNGALVVTVSCGERSFAGILLDCTKKSGLFGLSPSTLLPLADNSSAVSCHGQAP
EEGTGEVMQLETGPLHPHHKDPEKDQPPKTAVSEPPPPLIPPVPAGNLPPFPPYFEGAPFPHPLWLRNTY
QQWVPQPPPRTIKRTRRRLSRNRDPGRLILSTIRLRPRQVLCEKCKSTVSPQEASPSPLNTPKPRRRLGS
GPDSEHRKPEEPEDSAVIATAAPRRSKREKREEDRVAGERVPRSPVIKISYSTPQGKGEVVKIPSRVHGS
VEPFCPQQSLQNGSQDSEVSRDVEPRGGGDRPPSGSSASIPKLKLTRPVPPISDLPPPKIRLKPHRLGDG
EHEPLYRAELVEELNGCPRGPLVSSPALFADGSSHGLEDLSSGSSGEDDDLKRFPQGKHGRDGLAFLVDC
PGRRTDCTSESVCSTDSLDELKSSGSEVTSPDTGDLSSGDSASVPSSSADTRQTVPPLTVRLHTQSVSRC
VTEDGRTVAVGDIVWGHRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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