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Report for CCDS40106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40106.1 Public Mus musculus 7 Acsm5 23 108 98 CCDS HistoryNCBI Gene:272428Re-query CCDS DB by CCDS ID:40106.1Re-query CCDS DB by GeneID:272428See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066465.2 ENSMUSP00000063416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066465.2Link to Ensembl Protein Viewer:ENSMUSP00000063416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000066465Re-query CCDS DB by Protein ID:ENSMUSP00000063416
Original member Current member EBI ENSMUST00000207440.1 ENSMUSP00000146938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207440.1Link to Ensembl Protein Viewer:ENSMUSP00000146938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207440Re-query CCDS DB by Protein ID:ENSMUSP00000146938
Original member Current member NCBI NM_178758.3 NP_848873.1 Accepted alive Link to Nucleotide Sequence:NM_178758.3Link to Protein Sequence:NP_848873.1Re-query CCDS DB by Nucleotide ID:NM_178758Re-query CCDS DB by Protein ID:NP_848873Link to BLAST:NP_848873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848873.1 578 Q8BGA8-1 578 100% 0 0

Chromosomal Locations for CCDS 40106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 119528438 119528638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119530268 119530478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119531773 119531980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119534234 119534377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119534762 119534915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119535739 119535818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119537206 119537329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119538085 119538165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119538288 119538389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119540605 119540732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119540811 119540910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119542317 119542436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119542715 119542798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAGGTTGTGGCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACA
CACAGCCACCACCTCCCCCGATCCCTGAGGTGGTAGCTACCTGGGAAGCCATCAGCCTGGGGAGGCAGCC
AGTGCCCGAGTACTTCAACTTTGCTCATGATGTGTTGGATGTGTGGAGTCAGCTGGAAAAGACAGGGCAC
CGGCCCCCAAATCCTGCATTCTGGTGGGTGAACGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGC
TGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCAACCTGGAGACAGAAT
GATGCTGGTGCTTCCGAGACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACAGGTGTGGTC
ATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAAGT
CTATCGTCACCAGTGATGCCCTAGCTCCGCAAGTGGATGCCATCAGTGCTGACTGTCCCTCCCTCCAAAC
CAAGCTTCTGGTGTCTGACACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAGAGCGGCTTCT
CCAGAGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTCACCAGTGGAACCACAG
GGGCCCCCAAGATGGTGGAACATTCCCAGTCCAGCTATGGATTGGGTTTTGTGGCCAGTGGAAGGAGGTG
GATGGCCTTGACTGAGTCTGACATATTCTGGAACACAACTGACACTGGATGGGTGAAAGCAGCCTGGACC
CTCTTCTCTGCCTGGTCCAATGGAGCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAACTA
TTCTAAATACTCTCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGT
ACAAGAGGATCTGACAAGGTACAAGTTCCAATGTCTGAGGCACTGTTTGACGGGTGGAGAGGCCCTCAAC
CCTGATGTGAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCTCCATGAAGGCTATGGACAATCAGAAA
CAGTTGTCATCTGTGGCAATTCAAGAAACTCGACAATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACC
TTACGATGTGCAGATTGTAGATGAGGAGGGCAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCTGTC
CGAATCAAGCCTACTAGACCCTTCTGTTTCTTCAACTGCTATCTGGACAATCCCGAGAAGACAGCAGCAT
CAGAGCAAGGAGACTTTTACATCACTGGGGACAGAGCACATATGGACGAGGATGGCTACTTTTGGTTCTT
GGGGAGAAATGATGATGTAATCAACTCTTCAAGCTACCGGATTGGTCCTGTTGAAGTAGAGAGTGCACTT
GCTGAGCATCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAGGTGGTAA
AGGCATTTATAGTCCTTTCTCCAGCCTATGCATCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGA
GCATGTGAAGACAGTGACTGCTCCATACAAGTACCCCAGGAAGGTGGCTTTTATTTCAGAACTGCCAAAG
ACGGTTTCTGGAAAGATCCTAAGGAGTAAATTGAGAAACCAAGAGTGGGGGAGATGA

Translation (578 aa):
MRLWLRGLACQALRSSWGVCRIHTQPPPPPIPEVVATWEAISLGRQPVPEYFNFAHDVLDVWSQLEKTGH
RPPNPAFWWVNGSGTEVKWTFEELGKQSRKAANVLEGVCGLQPGDRMMLVLPRLPDWWLISVACMRTGVV
MIPGVSQLTAKDLKYRLQAARAKSIVTSDALAPQVDAISADCPSLQTKLLVSDTSRPGWINFRELLRAAS
PEHNCVRTRSGDSVAIYFTSGTTGAPKMVEHSQSSYGLGFVASGRRWMALTESDIFWNTTDTGWVKAAWT
LFSAWSNGACIFVHELPRVDAKTILNTLCRFPITTLCCVPTLFRLLVQEDLTRYKFQCLRHCLTGGEALN
PDVRDKWKSQTGLELHEGYGQSETVVICGNSRNSTIKSGSMGKASPPYDVQIVDEEGNVLPPGKEGNIAV
RIKPTRPFCFFNCYLDNPEKTAASEQGDFYITGDRAHMDEDGYFWFLGRNDDVINSSSYRIGPVEVESAL
AEHPAVLESAVVSSPDPIRGEVVKAFIVLSPAYASHDPEALTRELQEHVKTVTAPYKYPRKVAFISELPK
TVSGKILRSKLRNQEWGR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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