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Report for CCDS40036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40036.1 Public Mus musculus 7 Ppme1 23 108 98 CCDS HistoryNCBI Gene:72590Re-query CCDS DB by CCDS ID:40036.1Re-query CCDS DB by GeneID:72590See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032963.9 ENSMUSP00000032963.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032963.9Link to Ensembl Protein Viewer:ENSMUSP00000032963.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032963Re-query CCDS DB by Protein ID:ENSMUSP00000032963
Original member Current member NCBI NM_028292.2 NP_082568.1 Accepted alive Link to Nucleotide Sequence:NM_028292.2Link to Protein Sequence:NP_082568.1Re-query CCDS DB by Nucleotide ID:NM_028292Re-query CCDS DB by Protein ID:NP_082568Link to BLAST:NP_082568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082568.1 386 Q8BVQ5 386 100% 0 0

Chromosomal Locations for CCDS 40036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100327864 100327882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100329035 100329102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100331858 100331922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100333928 100333972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100335048 100335177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100338370 100338493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100341031 100341096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100341846 100341936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100344952 100345106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100347805 100347856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100348122 100348179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100354709 100354801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100355268 100355361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100371723 100371823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTCGGCCCTTGAAAAAAGCATGCACCTCGGCCGCCTACCTTCTCGCCCTCCTCTACCCGGCAGCGGGG
GCAGTCAGAGCGGAGCCAAGATGCGGATGGGCCCTGGACGGAAGCGGGACTTTACCCCTGTCCCATGGAG
TCAGTACTTTGAGTCAATGGAAGATGTGGAAGTGGAGAATGAAACTGGCAAGGATACTTTTCGAGTTTAC
AAGAGTGGTTCTGAGGGTCCAGTCCTGCTGCTGCTTCATGGAGGAGGCCATTCCGCCCTTTCCTGGGCAG
TGTTCACGGCAGCAATCATCAGTAGAGTACAGTGTAGGATTGTGGCTCTGGATCTGCGAGGTCACGGAGA
AACTAAAGTCAAGAATTCTGAAGACCTGTCAGCAGAAACAATGGCAAAAGATGTTGGCAATGTGGTGGAA
GCCATGTATGGAGACCTCCCTCCTCCAGTCATGCTGATTGGGCACAGCATGGGTGGCGCCATTGCAGTGC
ACACAGCCGCAGCTAACCTGGTACCAAGCCTCTTGGGCCTTTGCATGATTGATGTTGTAGAAGGTACCGC
CATGGATGCACTTAATAGCATGCAGAATTTCTTGCGTGGTCGACCTAAAACCTTCAAGTCTTTGGAGAAT
GCTATTGAATGGAGTGTGAAGAGTGGCCAGATTCGAAACCTTGAGTCTGCCCGTGTATCCATGGTCGGCC
AAGTCAAACAGTGTGAAGGAATTACAAGTCCAGAAGGTTCCAAATCCATAGTGGAAGGAATCATAGAGGA
GGAGGAAGAAGATGAGGAAGGAAGTGAGTCAGTTAACAAGAGGAAAAAGGAAGACGACATGGAAACCAAG
AAGGATCACCCATACACCTGGAGAATTGAGCTGGCAAAAACAGAAAAGTACTGGGATGGCTGGTTCCGGG
GCTTATCCAATCTCTTTCTTAGCTGTCCTATTCCTAAACTGCTGCTCTTGGCAGGTGTTGACAGATTGGA
TAAAGATCTGACCATAGGCCAGATGCAGGGGAAGTTCCAGATGCAGGTCTTACCCCAGTGTGGCCATGCA
GTCCATGAGGATGCCCCTGACAAGGTAGCTGAAGCTGTTGCCACTTTCCTGATCCGGCACAGGTTTGCAG
AGCCCATTGGAGGATTCCAGTGTGTGTTTCCTGGCTGCTAG

Translation (386 aa):
MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFTPVPWSQYFESMEDVEVENETGKDTFRVY
KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKVKNSEDLSAETMAKDVGNVVE
AMYGDLPPPVMLIGHSMGGAIAVHTAAANLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLEN
AIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESVNKRKKEDDMETK
KDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQCGHA
VHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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