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Report for CCDS39954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39954.1 Public Mus musculus 7 Tulp2 23 108 98 CCDS HistoryNCBI Gene:56734Re-query CCDS DB by CCDS ID:39954.1Re-query CCDS DB by GeneID:56734See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024233.14 ENSMUSP00000024233.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024233.14Link to Ensembl Protein Viewer:ENSMUSP00000024233.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024233Re-query CCDS DB by Protein ID:ENSMUSP00000024233
Original member Current member NCBI NM_008807.3 NP_032833.2 Accepted alive Link to Nucleotide Sequence:NM_008807.3Link to Protein Sequence:NP_032833.2Re-query CCDS DB by Nucleotide ID:NM_008807Re-query CCDS DB by Protein ID:NP_032833Link to BLAST:NP_032833.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032833.2 562 P46686-2 562 100% 0 0

Chromosomal Locations for CCDS 39954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45513753 45513787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45514171 45514203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45514655 45514706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45515418 45515556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45516239 45516376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45516516 45516686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45517780 45517967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45518586 45518885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45519731 45519843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520740 45520854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520943 45521041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45521844 45522015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45522223 45522356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGACCGTGAGGGGCCAAGAGGGCCAAGAAGTGGAGCGTCTCAGGAGAATGAACAGTGGAAGAAAGAGA
CCCTGGAGGATGAATTCTCTGGCGTGAGGCTGCAGAAGCTAGAACAACAGCGACAGCTATTTGAGAAGAA
GCAGCGCAGGAAACGCCAGGAGCCCCTCATGGTTCAGGCCAATCCTGATGCTACCCTGAGGCACCGGCGA
CCAAGGCGCGGGGAGGAGCGCTTCCAGAGTGACAGCAGCTGGGGCCTTGGTGTTGGGAGCCCTTTCCTCC
AGGAGAACGTTCCGCAGGCACATCTGCCCTCAGGGGCGCACAGTGCCCTTGTCACCATGAGCTATGTCGC
AGATGGGAGTGGTGAGCGGGCCCCCCTACTGTCACCCCGAGGAGCAGTATACACTCGGGGCAACGGCCCT
GCGGTCCGTCATCATCTTTGCTGGCTTCCAGACAGCTCCGATTCAGACGTGGAGGAAGTGACCATGGAAG
ACATCCCCGTCATCTCCCGACCTCCCCAGACGAATCTGGCAAACCTACGCAGGGGCTGGTTAGCCTCCCC
AGGACCCGGGATCAGTCAAGAAGAAAAAGAAGAAGAGGTTGGATCCACGGATGCCAGAGTTGAAGACAAG
ACACCCAGCCCAGACCCAGACCCAGACCCTACCGTGAACTCTGACGGAGATCATGGAGACCTGGCACCCT
GCAAGGTGGAAGAAAACACAGCCCAGAAGAATACAGAAACAGCCTCTGGCATCGGGGATGAAGACCGGGA
GAAGGGAGAGGTCACAGAGTCTACAGAGACAAACTATGCCCCAGTGGCATCCAAGGTTTTGCAAGGCGAC
GATGGTGACGCCAGCAACCACAATGCCTGGAACATGACCTGCCCCCAGCCTCGCATTCCCGGCCCTCGGC
TCGGGGAGGACATGGAAGCATACGTGTTGCTCCCTGCACCCCGAGACCACATGGTGCAGTGCCGCATCGT
CCGAAACAAGCACGGCATGGACAAGGGGATGTTCCCTTCCTACTACCTCTACCTGGAGGCCGAGGATGGT
GTAGCACATTTCCTTCTGGCTGGGCGGAAAAGGAAAAGAAGCAAAACTTCAAATTATCTCATCTCCCTGG
ACCCCAAAGACATGTCTCGCAATGGGAGCAACTTTGTAGGCAAAGTTAGATCCAATGTCTTGGGCACGAA
ATTCACCATCTTCGATAATGGGGTGAACCCTGAGCGGAGTTACTGGGTTCCAGACAGTGCCCGGATCAGA
GAGGAGCTGGGAGTCGTCTGTTATGAGACCAATGTCTTGGGATTCAGGGGGCCTCGGAAAATGACTGTGA
TCCTTCCAGGAATGGACAGCCGGAAGCAGAGGATGAAAGTCCAGCCACAAAATGATCAGGATTCCATATT
GAGTCGCGTACAGAAGGGCGCTGGACACGGGCTGCTTCTACTGCAGAACAAGGCCCCATCGTGGAGCGAC
GAAAGCGGCGCATACGTACTCAATTTTCACGGTCGCGTCACGCGGGCTTCAGTCAAGAACTTCCAGATAG
TGCACCCGGATGAACCCGACCACCTGGTGCTCCAGTTTGGCCGTGTGGCCCCAAACATATTCACGATGGA
TTTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCGCCATCTGCTTATCCAGTTTCGATGGGAAACTGGCG
TGTGAGTAA

Translation (562 aa):
MDREGPRGPRSGASQENEQWKKETLEDEFSGVRLQKLEQQRQLFEKKQRRKRQEPLMVQANPDATLRHRR
PRRGEERFQSDSSWGLGVGSPFLQENVPQAHLPSGAHSALVTMSYVADGSGERAPLLSPRGAVYTRGNGP
AVRHHLCWLPDSSDSDVEEVTMEDIPVISRPPQTNLANLRRGWLASPGPGISQEEKEEEVGSTDARVEDK
TPSPDPDPDPTVNSDGDHGDLAPCKVEENTAQKNTETASGIGDEDREKGEVTESTETNYAPVASKVLQGD
DGDASNHNAWNMTCPQPRIPGPRLGEDMEAYVLLPAPRDHMVQCRIVRNKHGMDKGMFPSYYLYLEAEDG
VAHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRSNVLGTKFTIFDNGVNPERSYWVPDSARIR
EELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRMKVQPQNDQDSILSRVQKGAGHGLLLLQNKAPSWSD
ESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA
CE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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