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Report for CCDS39946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39946.1 Public Mus musculus 7 Tsks 23 108 98 CCDS HistoryNCBI Gene:22116Re-query CCDS DB by CCDS ID:39946.1Re-query CCDS DB by GeneID:22116See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080233.8 ENSMUSP00000079122.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080233.8Link to Ensembl Protein Viewer:ENSMUSP00000079122.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080233Re-query CCDS DB by Protein ID:ENSMUSP00000079122
Original member Current member NCBI NM_001077591.1 NP_001071059.1 Accepted alive Link to Nucleotide Sequence:NM_001077591.1Link to Protein Sequence:NP_001071059.1Re-query CCDS DB by Nucleotide ID:NM_001077591Re-query CCDS DB by Protein ID:NP_001071059Link to BLAST:NP_001071059.1

Chromosomal Locations for CCDS 39946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44943284 44943453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44943782 44944004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44950779 44950874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44951039 44951122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44951863 44951946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44952546 44952832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44953747 44953941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44954314 44954487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44956452 44956587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44957597 44957725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCAAGCGTGGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCCACCTGCGG
GGGTAGAAAGCCGTGCCCAGCTGGTCCCCGAGGCTCCCGGGGGGGTGACCAGCCCTGCCAAAGGGATAAC
GAAAAAAAAGAAGGCTGTGTCCTTCCATGGGGTGGAGCCCCGGATGTCCCACGAGCCGATGCACTGGTGC
CTGAACCTCAAGCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAACCTGGCTGCCGTGGAGCCCGACT
CCTCGGGCACAGACTCGACCACAGAGGACAGTGGTCCACTGGCACTGCCAGGGCCACCTGCTTCCCCTAC
AACACCCTGGGCTCCAGAGGACCCTGACATCACAGAACTACTGAGTGGGGTCAACAGTGGATTGGTACGT
GCCAAAGACTCCATCACCAGCTTGAAGGAAAAGACCACGCGGGTTAATCAGCACGTTCAGACTCTGCAGA
GCGAGTGCTCTGTGCTGAGTGAGAATCTGGAAAGAAGACGGCAGGAGGCAGAAGAGTTGGAGGGGTACTG
CAGTCAGTTGAAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTC
CTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGCTAAGATACCTCCAGCAGCAACTGCAGGATGAGACGC
CCCGGAGACAGGAGGCCGAGTTGCAGGAGTTGGAGCAAAAACTGGAGGCTGGCCTCTCCCGACATGGTCT
GAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCCCCGAGGAACCCCCGCGGCAGCGA
GGCCTGTCCTCCAGTGGCTGGGGCATGGCAGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAGGAGT
TGCAGAAGGTCTCCACCGGCCTGGAGGAGCTGAGGAGGGAGGTGTCCTCGCTGGCAGCCCGGTGGCATCA
GGAGGAGGGGGCAGTGCAGGAGGCCCTGAGGTTGCTGGGAGGCCTTGGCGGCCGTCTGGATGGCTTCCTG
GGCCAGTGGGAGCGGGCGCAGCGGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAGCTGCGAGGACGAG
CAGATGAGTTGTGCACTATGGTGGAGAGGTCAGCAGTGTCTGTCGCCTCACTGAGGAGTGAACTGGAGGC
ACTGGGCCCAGTAAAACCCATTCTGGAGGAGCTGGGACGGCAACTTCAGAACTCCCGGAGGGGAGCTGAC
CATGTCTTGAACTTGGATCGGTCTGCCCAAGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTAT
CCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGACCCCGCTGGTGGATGAGGTGAAGCAGAAGGG
TCTGGCTCCTGCCTGCCCCAGTTGCCAGAGGCTACACAAGAAGATTCTGGAGCTGGAGCGCCAGGCCTTG
GCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCA
AGAACCTACTGCTGACGGACAAGATGAAGCCGGAGTGA

Translation (525 aa):
MASVVVKTIWQSKEIHEAGDPPAGVESRAQLVPEAPGGVTSPAKGITKKKKAVSFHGVEPRMSHEPMHWC
LNLKRSSACTNVSLLNLAAVEPDSSGTDSTTEDSGPLALPGPPASPTTPWAPEDPDITELLSGVNSGLVR
AKDSITSLKEKTTRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNV
LKQNSALLEEKLRYLQQQLQDETPRRQEAELQELEQKLEAGLSRHGLSPATPIQGCSGPPGSPEEPPRQR
GLSSSGWGMAVRTGEGPSLSEQELQKVSTGLEELRREVSSLAARWHQEEGAVQEALRLLGGLGGRLDGFL
GQWERAQREQAQSARGLQELRGRADELCTMVERSAVSVASLRSELEALGPVKPILEELGRQLQNSRRGAD
HVLNLDRSAQGPCARCASQGQQLSTESLQQLLERALTPLVDEVKQKGLAPACPSCQRLHKKILELERQAL
AKHVRAEALSSTLRLAQDEAVRAKNLLLTDKMKPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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