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Report for CCDS39888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39888.1 Public Mus musculus 7 Etv2 23 108 98 CCDS HistoryNCBI Gene:14008Re-query CCDS DB by CCDS ID:39888.1Re-query CCDS DB by GeneID:14008See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108147.2 ENSMUSP00000103782.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108147.2Link to Ensembl Protein Viewer:ENSMUSP00000103782.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108147Re-query CCDS DB by Protein ID:ENSMUSP00000103782
Original member Current member NCBI NM_007959.2 NP_031985.2 Accepted alive Link to Nucleotide Sequence:NM_007959.2Link to Protein Sequence:NP_031985.2Re-query CCDS DB by Nucleotide ID:NM_007959Re-query CCDS DB by Protein ID:NP_031985Link to BLAST:NP_031985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031985.2 335 P41163 335 100% 0 0

Chromosomal Locations for CCDS 39888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30633634 30633834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30633989 30634101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30634613 30635089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30635308 30635367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30635575 30635661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30635761 30635830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGACCTGTGGAACTGGGATGAGGCGTCACTGCAGGAAGTGCCTCCTGGGGACAAGCTGACAGGACTGG
GAGCGGAATTTGGTTTCTATTTCCCTGAAGTGGCTCTACAAGAGGACACACCGATCACACCAATGAACGT
AGAAGGCTGCTGGAAAGGGTTCCCAGAGCTGGACTGGAACCCCGCTTTACCTCACGAAGACGTACCTTTC
CAGGCGGAGCCCGTTGCTCACCCCCTTCCGTGGTCGCGAGACTGGACAGACCTGGGATGCAACACCTCGG
ACCCGTGGAGCTGTGCTTCACAGACGCCAGGCCCTGCCCCTCCTGGCACGAGCCCCTCCCCCTTCGTCGG
CTTTGAAGGGGCGACCGGCCAGAATCCTGCCACCTCGGCAGGAGGGGTCCCCTCGTGGTCGCACCCTCCA
GCTGCCTGGAGCACTACCAGCTGGGACTGTTCTGTGGGCCCCAGTGGCGCCACCTACTGGGACAATGGCC
TGGGCGGGGAAGCGCATGAGGACTATAAAATGTCATGGGGCGGGTCTGCCGGTTCGGACTACACCACCAC
GTGGAATACTGGGCTGCAGGACTGCAGCATCCCTTTCGAGGGGCACCAGAGTCCAGCATTCACCACGCCC
TCCAAATCGAACAAGCAGTCTGATAGAGCCACATTGACTCGCTACTCCAAAACTAACCACCGAGGTCCCA
TTCAGCTGTGGCAATTCCTCCTGGAGCTGCTCCACGACGGGGCTCGCAGCAGCTGCATCCGCTGGACGGG
CAATAGCCGCGAGTTCCAGCTGTGCGACCCCAAAGAGGTGGCCCGGCTGTGGGGCGAGCGCAAGAGGAAG
CCGGGAATGAATTATGAGAAACTGAGTCGAGGTCTACGTTATTATTACCGCCGCGACATCGTGCTCAAGA
GTGGTGGGCGCAAGTACACATACCGCTTCGGGGGACGTGTGCCTGTCCTCGCCTATCAGGATGATATGGG
GCATCTGCCAGGTGCAGAAGGCCAATAA

Translation (335 aa):
MDLWNWDEASLQEVPPGDKLTGLGAEFGFYFPEVALQEDTPITPMNVEGCWKGFPELDWNPALPHEDVPF
QAEPVAHPLPWSRDWTDLGCNTSDPWSCASQTPGPAPPGTSPSPFVGFEGATGQNPATSAGGVPSWSHPP
AAWSTTSWDCSVGPSGATYWDNGLGGEAHEDYKMSWGGSAGSDYTTTWNTGLQDCSIPFEGHQSPAFTTP
SKSNKQSDRATLTRYSKTNHRGPIQLWQFLLELLHDGARSSCIRWTGNSREFQLCDPKEVARLWGERKRK
PGMNYEKLSRGLRYYYRRDIVLKSGGRKYTYRFGGRVPVLAYQDDMGHLPGAEGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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