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Report for CCDS39847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39847.1 Public Mus musculus 7 Coq8b 23 108 98 CCDS HistoryNCBI Gene:76889Re-query CCDS DB by CCDS ID:39847.1Re-query CCDS DB by GeneID:76889See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003860.12 ENSMUSP00000003860.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003860.12Link to Ensembl Protein Viewer:ENSMUSP00000003860.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003860Re-query CCDS DB by Protein ID:ENSMUSP00000003860
Original member Current member EBI ENSMUST00000108378.9 ENSMUSP00000104015.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108378.9Link to Ensembl Protein Viewer:ENSMUSP00000104015.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108378Re-query CCDS DB by Protein ID:ENSMUSP00000104015
Original member Current member NCBI NM_133770.2 NP_598531.2 Accepted alive Link to Nucleotide Sequence:NM_133770.2Link to Protein Sequence:NP_598531.2Re-query CCDS DB by Nucleotide ID:NM_133770Re-query CCDS DB by Protein ID:NP_598531Link to BLAST:NP_598531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598531.2 533 Q566J8 533 99.8124% 0 1

Chromosomal Locations for CCDS 39847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27233468 27233572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27233702 27233821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27233941 27234007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27237378 27237455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27239797 27239919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27240040 27240125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27241979 27242119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27242212 27242293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27243303 27243396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27250287 27250428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27250536 27250643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27252261 27252326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27256612 27256698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27257223 27257525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGTGGCTGGAGCTAGGTGCCATGCTGCGCAGGACCTGTGGACCGCTGGGCAGGGCTGTTCGTCTGCCCT
GTGGGGGGGCCCTAGGACCTAGGCCCCACTGGTGGGGGCCATGTAGGAGTTGCTTGGCCCAAAGTGTTCA
TCAAGACCAGCCTGGAAGAGGCCTCAGTGAAGATGACATTCGCAGGGCACGGGAGGCCCGGCTCAGGAAG
GCACCCCGGCCCCAGCTGAGTGATCGCTCTCGTGAACGCAAGGTGCCTGCCTCCCGCATCAGTCGCTTGG
CCAGCTTTGGGGGGCTGGCTGTGGGCTTGGGCCTGGGAGCGCTGGCTGAGGTGACTAAGAAGTCCTTGCC
AGGTGGAAGTCTGCAGCATGAGGGCGTCTCTGGATTGGGCTCCAGTCCTTTCCTCTCCGAGGCCAATGCT
GAGAGGATCGTGCAGACCTTATGTACAGTCCGGGGGGCTGCCCTCAAGATCGGCCAAATGCTCAGTATCC
AGGACAACAGCTTTATCAGCCCCCAGCTTCAGCGAATCTTTGAGAGGGTCCGACAGAGTGCCGACTTTAT
GCCCCGCTGGCAAATGATGAGAGTTCTAGAAGAGGAGCTAGGCAAGGACTGGCAAGACAAGGTGGCCTCC
CTCGAGGAAGTGCCCTTTGCTGCTGCCTCCATTGGGCAGGTACACCAAGGCTTGCTAAAGGATGGGACTG
AGGTGGCTGTGAAGATCCAGTACCCAGGTGTTGCCCAGAGCATCCAGAGTGACGTGGAGAACCTGCTGGC
CCTGCTCAAGATGAGTGTGGGCCTGCCAGAGGGCCTGTTTGCTGAGCAGAGCCTGCAGACCTTGCAGCAG
GAGCTGGCTTGGGAATGTGACTACTGCAGAGAAGCGGCCTGTGCCCAGACCTTCAGGAAGCTCTTAGCTG
ACGACCCCTTCTTCCGAGTGCCAGCTGTGGTGCAGGAGCTATGCACTACACGGGTGCTGGGCATGGAGCT
GGCTGGGGGAATCCCTCTAGACCAGTGCCAGGGCCTGAGCCAAGACATCCGGAATCAGATCTGCTTTCAG
CTCCTGAGGTTGTGTCTGCGGGAACTGTTTGAGTTCAGATTCATGCAGACTGATCCCAACTGGGCCAACT
TCCTGTATGATGCCTCCAGCCACCAGGTGACTCTACTGGATTTTGGTGCAAGCCGGGCGTTTGGGACAGA
GTTCACGGACCATTACATTGAGGTGGTGAAGGCTGCAGCAGATGGAGACAGAGATCGAGTTCTACAGAAA
TCCCAGGACCTCAAGTTCCTTACAGGCTTTGAAACCAAGGCATTCTCTGACGCCCACGTCGAGGCAGTGA
TGATCCTGGGGGAGCCCTTTGCTGCCTCAGGCCCCTACGACTTTGGGGCTGGAGAGACTGCTCGCCGAAT
ACAGGGCCTCATCCCGGTATTGCTTCGGCACCGGCTGCGCCCACCGCCTGAGGAGACCTATGCTCTACAC
CGCAAGCTAGCTGGGGCTTTCTTAGCCTGTGCCCGTCTCCACGCCCACATCGCCTGCCGGGACCTCTTCC
AAGATACCTACCACCGCTACTGGGCCAGTCGCCAGACACTGCCGCTGCCAGCAGCCTCCTGA

Translation (533 aa):
MWLELGAMLRRTCGPLGRAVRLPCGGALGPRPHWWGPCRSCLAQSVHQDQPGRGLSEDDIRRAREARLRK
APRPQLSDRSRERKVPASRISRLASFGGLAVGLGLGALAEVTKKSLPGGSLQHEGVSGLGSSPFLSEANA
ERIVQTLCTVRGAALKIGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMMRVLEEELGKDWQDKVAS
LEEVPFAAASIGQVHQGLLKDGTEVAVKIQYPGVAQSIQSDVENLLALLKMSVGLPEGLFAEQSLQTLQQ
ELAWECDYCREAACAQTFRKLLADDPFFRVPAVVQELCTTRVLGMELAGGIPLDQCQGLSQDIRNQICFQ
LLRLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASRAFGTEFTDHYIEVVKAAADGDRDRVLQK
SQDLKFLTGFETKAFSDAHVEAVMILGEPFAASGPYDFGAGETARRIQGLIPVLLRHRLRPPPEETYALH
RKLAGAFLACARLHAHIACRDLFQDTYHRYWASRQTLPLPAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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