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Report for CCDS39639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39639.1 Public Mus musculus 6 Cd27 23 108 98 CCDS HistoryNCBI Gene:21940Re-query CCDS DB by CCDS ID:39639.1Re-query CCDS DB by GeneID:21940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032486.12 ENSMUSP00000032486.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032486.12Link to Ensembl Protein Viewer:ENSMUSP00000032486.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032486Re-query CCDS DB by Protein ID:ENSMUSP00000032486
Original member Current member NCBI NM_001033126.2 NP_001028298.1 Accepted alive Link to Nucleotide Sequence:NM_001033126.2Link to Protein Sequence:NP_001028298.1Re-query CCDS DB by Nucleotide ID:NM_001033126Re-query CCDS DB by Protein ID:NP_001028298Link to BLAST:NP_001028298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028298.1 250 P41272 250 100% 0 0

Chromosomal Locations for CCDS 39639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125233310 125233431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125233642 125233761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125234254 125234316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125234515 125234694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125236473 125236604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125236757 125236892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCATGGCCACCTCCCTACTGGCTCTGCATGCTGGGGACCTTGGTAGGACTCTCAGCTACCCTAGCCC
CAAACAGCTGTCCAGACAAACACTACTGGACTGGGGGAGGACTCTGCTGCCGGATGTGTGAGCCAGGTAC
ATTCTTTGTGAAGGACTGTGAACAAGACAGAACAGCTGCTCAGTGTGATCCCTGTATACCAGGCACCTCC
TTCTCTCCAGACTACCACACCCGGCCCCACTGCGAGAGCTGCAGGCATTGTAACTCTGGTTTTCTTATCC
GCAACTGCACAGTCACTGCCAATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGAATG
TACAGAGTGTGACCCTCCTCTAAACCCTGCACTGACCAGACAGCCATCTGAGACCCCGAGCCCACAGCCA
CCACCCACCCACTTACCTCATGGCACAGAGAAGCCATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGA
CTGTCTATAGCCAGCGGTCATCCCATAGACCCCTGTGCAGCTCGGACTGCATCCGGATCTTTGTGACCTT
CTCCAGCATGTTTCTTATCTTCGTCCTGGGTGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGGGCCA
AATGAAGACCGGCAGGCAGTGCCTGAAGAGCCTTGTCCTTACAGCTGCCCCAGGGAAGAGGAGGGCAGTG
CTATCCCTATCCAGGAGGACTACCGGAAACCCGAGCCTGCTTTCTACCCTTGA

Translation (250 aa):
MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEPGTFFVKDCEQDRTAAQCDPCIPGTS
FSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECSCSKNWQCRDQECTECDPPLNPALTRQPSETPSPQP
PPTHLPHGTEKPSWPLHRQLPNSTVYSQRSSHRPLCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGP
NEDRQAVPEEPCPYSCPREEEGSAIPIQEDYRKPEPAFYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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