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Report for CCDS39581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39581.1 Public Mus musculus 6 Cntn3 23 108 98 CCDS HistoryNCBI Gene:18488Re-query CCDS DB by CCDS ID:39581.1Re-query CCDS DB by GeneID:18488See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032159.6 ENSMUSP00000032159.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032159.6Link to Ensembl Protein Viewer:ENSMUSP00000032159.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032159Re-query CCDS DB by Protein ID:ENSMUSP00000032159
Original member Current member EBI ENSMUST00000203619.2 ENSMUSP00000145176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203619.2Link to Ensembl Protein Viewer:ENSMUSP00000145176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203619Re-query CCDS DB by Protein ID:ENSMUSP00000145176
Original member NCBI NM_008779.2 NP_032805.2 Updated not alive Link to Nucleotide Sequence:NM_008779.2Link to Protein Sequence:NP_032805.2Re-query CCDS DB by Nucleotide ID:NM_008779Re-query CCDS DB by Protein ID:NP_032805
Current member NCBI NM_008779.3 NP_032805.2 Accepted alive Link to Nucleotide Sequence:NM_008779.3Link to Protein Sequence:NP_032805.2Re-query CCDS DB by Nucleotide ID:NM_008779Re-query CCDS DB by Protein ID:NP_032805Link to BLAST:NP_032805.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032805.2 1028 Q07409 1028 100% 0 0

Chromosomal Locations for CCDS 39581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 102165318 102165418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102168893 102169061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102170578 102170690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102187040 102187226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102199236 102199351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102203832 102204066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102206527 102206597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102208059 102208208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102208314 102208472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102209239 102209356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102241990 102242165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102245045 102245172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102265319 102265469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102267374 102267503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102269104 102269240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102273640 102273824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102277219 102277321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102278278 102278481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102337298 102337393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102420253 102420428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102437803 102437929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 102464529 102464583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3087 nt):
ATGATGTTGTCATGGAAACAGTTGATCCTGCTTTCATTCATTGGCTGCCTGGCAGGTGAACTTCTTTTAC
AAGGCCCTGTGTTTATCAAAGAGCCCAGCAACAGTATTTTCCCTGTTGATTCAGAGGACAAAAAAATAAC
ATTAAATTGTGAAGCAAGAGGCAACCCTTCACCTCATTACAGGTGGCAGCTGAATGGCAGTGATATTGAT
ACAAGTCTGGACCATCGTTACAAACTGAATGGAGGAAATCTCATAGTTATTAACCCTAACAGAAATTGGG
ATACAGGAAGTTACCAGTGTTTTGCAACGAATTCTCTTGGAACAATAGTGAGCAGAGAAGCCAAACTCCA
GTTTGCCTATCTTGAAAATTTTAAGACCAGGATGAGAAGCACTGTGTCGGTCCGTGAAGGCCAGGGAGTG
GTGCTTCTCTGTGGACCCCCACCTCACTCAGGAGAACTGTCATATGCTTGGGTCTTCAATGAGTATCCAT
CATTTGTTGAAGAAGACAGTCGACGATTTGTCTCTCAAGAGACAGGACACCTCTACATAGCTAAGGTGGA
ACCATCTGATGTGGGAAATTACACATGTGTGGTGACCAGCACGGTGACAAATACCAGAGTATTGGGCTCC
CCAACCCCTTTGGTGCTACGCTCTGATGGTGTCATGGGTGAATATGAACCCAAAATAGAAGTCCAGTTTC
CAGAGACTCTTCCAGCAGCTAAAGGTTCAACTGTGAGGTTGGAATGCTTCGCCCTGGGAAACCCTGTTCC
TCAGATTAATTGGAGAAGAAGTGATGGGATGCCGTTTCCCAACAAAATTAAGTTGAGGAAGTTCAATGGT
ATGCTGGAAATTCAAAACTTCCAACAGGAAGATACAGGCTCCTATGAGTGTATTGCTGAAAATTCACGAG
GAAAAAATGTGGCGAGAGGGCGGCTCACTTACTATGCAAAACCTTATTGGCTTCAACTCTTAAGAGATGT
GGAAATTGCTGTGGAGGACAGTCTTTATTGGGAATGCCGGGCAAGTGGGAAGCCTAAACCCTCTTATCGA
TGGCTGAAAAATGGAGATGCCTTAGTACTAGAGGAGAGAATACAGATAGAAAATGGTGCCCTTACAATAA
CCAACCTCAATGTGACTGACTCTGGAATGTTCCAATGTATAGCAGAAAACAAGCATGGTCTCATCTACTC
CAGTGCTGAGCTCAAGGTAGTAGCTTCTGCTCCAGATTTTTCAAGAAACCCTATGAAAAAAATGGTCCAG
GTGCAGGTGGGCAGCCTGGTGATCCTGGATTGTAAACCCAGAGCCTCTCCAAGGGCACTTTCTTTCTGGA
AGAAGGGAGACATGATGGTGCGGGAGCAGGCAAGGGTTTCTTTTTTAAATGATGGAGGACTCAAAATCAT
GAATGTGACTAAGGCAGACGCTGGAACCTACACCTGCACAGCAGAAAACCAGTTTGGGAAAGCAAATGGC
ACAACCCACTTGGTTGTGACAGAACCTACGAGAATAATTTTGGCACCTTCAAACATGGACGTTGCTGTTG
GTGAGAGCGTCATTTTACCCTGCCAGGTTCAACATGATCCCCTATTAGACATAATGTTTGCCTGGTATTT
CAATGGAGCCCTTACAGACTTTAAGAAAGATGGATCTCACTTTGAGAAAGTTGGTGGGAGTTCATCTGGT
GATTTAATGATCAGAAACATTCAATTGAAACACAGTGGGAAGTACGTATGTATGGTGCAGACAGGGGTGG
ACAGTGTTTCCTCTGCAGCTGAGCTCATCGTGAGAGGTTCACCTGGGCCACCGGAAAATGTGAAGGTAGA
TGAAATTACAGACACAACAGCCCAGCTCTCTTGGACGGAAGGCACGGACAGTCATAGCCCAGTTATATCG
TATGCAGTCCAAGCTAGGACGCCTTTCTCTGTGGGCTGGCAAAGTGTCAGAACAGTACCTGAGGTCATTG
ATGGCAAGACACATACAGCTACTGTCGTGGAGTTAAACCCATGGGTGGAATATGAATTTCGCATTGTAGC
CAGTAACAAAATCGGAGGTGGAGAACCCAGTTTACCCTCAGAAAAAGTAAGGACTGAAGAGGCAGCTCCA
GAAATCGCACCTTCTGAGGTCAGCGGAGGAGGTGGAAGCCGATCTGAACTAGTGATAACCTGGGATCCAG
TCCCTGAAGAACTACAGAATGGAGGAGGTTTTGGGTATGTGGTTGCTTTCCGCCCACTTGGGGTTACCAC
CTGGATCCAGACAGTGGTGACATCCCCAGATAACCCAAGATACGTCTTTAGGAATGAAAGCATTGTGCCC
TTTTCGCCATATGAAGTTAAAGTGGGAGTTTACAATAACAAAGGTGAAGGACCCTTTAGCCCAGTGACAA
CTGTGTTCTCTGCAGAGGAAGAGCCTACAGTTGCCCCATCTCACATCTCTGCCCATAGCCTGTCTTCCTC
AGAAATTGAAGTTTCTTGGAATACAATTCCCTGGAAGTTGAGCAATGGACATTTACTGGGCTATGAGGTG
CGGTACTGGAACAATGGAGGAGAAGAAGAATCATCCCGCAAAGTGAAAGTGGCAGGAAATCAGACATCAG
CTGTGCTCCGAGGCCTGAAGAGCAACCTGGCCTATTACACAGCTGTCCGGGCTTACAACAGCGCAGGCGC
TGGTCCCTTCAGCGCCACAGTTAATGCGACCACCAAGAAAACCCCTCCCAGTCAGCCACCAGGAAATGTT
GTTTGGAATGCTACAGACACTAAAGTGCTACTTAATTGGGAACAAGTGAAAGCCATGGAGAATGAATCAG
AAGTAACAGGCTACAAGGTTTTCTATAGGACTAGCAGTCAGAATAATGTGCACGTGCTGAACACAAATAA
AACTTCAGCTGAACTGTTGCTGCCTATCAAAGAAGACTACATTATTGAGGTCAAGGCCACCACAGATGGA
GGGGATGGCACCAGTAGTGAGCAGATCAGGATTCCAAGAATAACCAGTATGGATGCAAGAGGATCCACGT
CAGCCATTTCTAACATCCACCCTTTGTCAGGTTATATGTCTGTCCTACTGTTCTTTATTGTAAATGCTTT
GTGGTGA

Translation (1028 aa):
MMLSWKQLILLSFIGCLAGELLLQGPVFIKEPSNSIFPVDSEDKKITLNCEARGNPSPHYRWQLNGSDID
TSLDHRYKLNGGNLIVINPNRNWDTGSYQCFATNSLGTIVSREAKLQFAYLENFKTRMRSTVSVREGQGV
VLLCGPPPHSGELSYAWVFNEYPSFVEEDSRRFVSQETGHLYIAKVEPSDVGNYTCVVTSTVTNTRVLGS
PTPLVLRSDGVMGEYEPKIEVQFPETLPAAKGSTVRLECFALGNPVPQINWRRSDGMPFPNKIKLRKFNG
MLEIQNFQQEDTGSYECIAENSRGKNVARGRLTYYAKPYWLQLLRDVEIAVEDSLYWECRASGKPKPSYR
WLKNGDALVLEERIQIENGALTITNLNVTDSGMFQCIAENKHGLIYSSAELKVVASAPDFSRNPMKKMVQ
VQVGSLVILDCKPRASPRALSFWKKGDMMVREQARVSFLNDGGLKIMNVTKADAGTYTCTAENQFGKANG
TTHLVVTEPTRIILAPSNMDVAVGESVILPCQVQHDPLLDIMFAWYFNGALTDFKKDGSHFEKVGGSSSG
DLMIRNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPPENVKVDEITDTTAQLSWTEGTDSHSPVIS
YAVQARTPFSVGWQSVRTVPEVIDGKTHTATVVELNPWVEYEFRIVASNKIGGGEPSLPSEKVRTEEAAP
EIAPSEVSGGGGSRSELVITWDPVPEELQNGGGFGYVVAFRPLGVTTWIQTVVTSPDNPRYVFRNESIVP
FSPYEVKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSWNTIPWKLSNGHLLGYEV
RYWNNGGEEESSRKVKVAGNQTSAVLRGLKSNLAYYTAVRAYNSAGAGPFSATVNATTKKTPPSQPPGNV
VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVHVLNTNKTSAELLLPIKEDYIIEVKATTDG
GDGTSSEQIRIPRITSMDARGSTSAISNIHPLSGYMSVLLFFIVNALW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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