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Report for CCDS39557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39557.1 Public Mus musculus 6 Chchd6 23 108 98 CCDS HistoryNCBI Gene:66098Re-query CCDS DB by CCDS ID:39557.1Re-query CCDS DB by GeneID:66098See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032172.13 ENSMUSP00000032172.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032172.13Link to Ensembl Protein Viewer:ENSMUSP00000032172.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032172Re-query CCDS DB by Protein ID:ENSMUSP00000032172
Original member Current member NCBI NM_025351.3 NP_079627.3 Accepted alive Link to Nucleotide Sequence:NM_025351.3Link to Protein Sequence:NP_079627.3Re-query CCDS DB by Nucleotide ID:NM_025351Re-query CCDS DB by Protein ID:NP_079627Link to BLAST:NP_079627.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079627.3 273 Q91VN4 273 100% 0 0

Chromosomal Locations for CCDS 39557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89383343 89383348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89384604 89384739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89419748 89419818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89467390 89467473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89567587 89567731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89569343 89569412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89574368 89574590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89595459 89595545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGCAGCGCCGAGAGCGCCGAGGCCCGAAGGGTGTCCTTCGAGATGGATGAGGAGGAGCGGGTCCGGG
TGCTGCAGGGCATCCGGCTGTCTGAAAGTGTTGTGAACCGCATGAAGGATTGCAGCCAGCCTTCAGCAGG
GGAACAGCTGGTTCCTGGTTTTGGTCCTTCGTCTTCTGCTCCTGTGCCCACTGTCCCTCTACCAGCCATC
TCTGTGCCCACTGTCCCTGCACCTACCACTCCTGTGCCTACTGCTCCTTCATCCTCTGTACGTGGCCTGC
CAGGAGGCACCTGTAAAGGCCCTCTGACAGACGTTAAAGTGCCCAGTGCAGAGAGTGGTGGTGGTCTGCA
GTCCTCAGCAGTGAAGGAGGATCTTAAGAAGTTCCAACAGGAGCAGTTGGCAGTCCAGGATGAGATGGTC
AGGGTGGCAAAAAAGGAAAAAGAGGCAGCTGAGAAGCACTTGAAGGCATCCCTGCCCAAGAAGAAGGCCA
GCCTCACCCATGAGCAACAGCAGTCAGCTCGACTAGCCAGGGAACTGGAGGACAGAGAGGCCGAGCTCAG
CCGCCGTGACACCTTCTACAAGGAGCAGCAGGGGCGCATCCAGGAAAAGAATGCTGAGCTGTATAAACTG
TCTTCCCAACAATTCCATGAGGCGGCTTCAAAAGCAGAGAGCACAATAAAGCCCCGCAGAGTGGAGCCTG
TGTGCTCTGGCCTACAAGCCCAGATCCTCCGCTGTTACCGGGACCATCTGCATGAAGTGCTTCTGTGCTC
GGACCTGGTCAAGGCATACCAGCACTGTGTGAGCACTGCCCGCAAGGGCTGA

Translation (273 aa):
MGSAESAEARRVSFEMDEEERVRVLQGIRLSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAI
SVPTVPAPTTPVPTAPSSSVRGLPGGTCKGPLTDVKVPSAESGGGLQSSAVKEDLKKFQQEQLAVQDEMV
RVAKKEKEAAEKHLKASLPKKKASLTHEQQQSARLARELEDREAELSRRDTFYKEQQGRIQEKNAELYKL
SSQQFHEAASKAESTIKPRRVEPVCSGLQAQILRCYRDHLHEVLLCSDLVKAYQHCVSTARKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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