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Report for CCDS39494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39494.1 Public Mus musculus 6 Fkbp9 23 108 98 CCDS HistoryNCBI Gene:27055Re-query CCDS DB by CCDS ID:39494.1Re-query CCDS DB by GeneID:27055See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031795.7 ENSMUSP00000031795.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031795.7Link to Ensembl Protein Viewer:ENSMUSP00000031795.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031795Re-query CCDS DB by Protein ID:ENSMUSP00000031795
Original member Current member NCBI NM_012056.2 NP_036186.2 Accepted alive Link to Nucleotide Sequence:NM_012056.2Link to Protein Sequence:NP_036186.2Re-query CCDS DB by Nucleotide ID:NM_012056Re-query CCDS DB by Protein ID:NP_036186Link to BLAST:NP_036186.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036186.2 570 Q9Z247 570 100% 0 0

Chromosomal Locations for CCDS 39494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56832207 56832427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56849638 56849783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56850563 56850752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56851362 56851507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56856233 56856422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56860656 56860801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56868720 56868906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56873367 56873512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56875669 56875832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56878034 56878210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGCATTAGGGGCCCGGGGCTGGCGGCGCCGGTCGCTGCTCCTGCTGCTGCTCTGGGTGACCGGGCAGG
CAGCCCCGGTGTTGGGCCTGGCTGTGAGCTCGGAACTTCAGATCCAGCAGAGCTTCGTGCCTGATGAGTG
TCCGCGCACGGTGCACAGTGGCGACTTCGTGCGCTACCACTACGTGGGGACTTTCCTCGACGGCCAGAAG
TTCGACTCCAGCTATGACAGGGACTCTACCTTCAATGTGTTTGTGGGAAAAGGCCAGCTGATCGCAGGGA
TGGACCAAGCTCTTGTTGGGATGTGCGTAAACGAGAGGCGTCTTGTGACGATTCCCCCAAACCTTGCCTA
CGGAAGTGAAGGAGTTTCTGGTGTGATCCCTCCAAACTCAGTTCTTCATTTTGATGTACTCTTGGTGGAT
ATCTGGAATTCTGAAGACCAGGTTCACATTCAGACCTATTTCAAGCCTCCCAGTTGCCCTCGGACTATCC
AAGTATCGGATTTTGTGAGGTACCACTACAACGGAACGTTCTTGGATGGGACACTGTTTGATTCCAGCCA
TAATCGCATGAAAACCTATGACACGTACGTGGGGATTGGATGGCTGATCCCTGGAATGGACAAAGGGCTG
CTGGGCATGTGTGTCGGCGAGAAGCGTATCATCACAGTCCCCCCTTTTCTGGCCTACGGGGAGGAGGGAG
ATGGAAAAGACATCCCTGGGCAGGCATCCTTAGTCTTTGATGTTGCATTGTTGGACCTCCATAACCCCAA
GGATACCATTTCCATTGAGAATAAGGTGGTTCCTGAGAACTGTGAGAGGAGAAGTCAGAGTGGGGACTTC
CTCAGGTATCATTACAATGGCACACTTCTGGACGGCACTCTCTTTGACTCCAGCTATTCACGGAACCACA
CCTTTGACACATACATTGGGCAGGGCTATGTGATTCCTGGGATGGATGAAGGCTTACTTGGTGTCTGCAT
TGGGGAGAGGCGAAGGATTGTGGTCCCTCCTCACCTGGGCTACGGAGAAAAAGGCAGAGGGAGCATTCCT
GGCTCAGCCGTGCTGGTGTTCGACATCCACGTGATTGACTTTCACAACCCTTCGGATTCCATCAGCATCA
CTTCCCACTACAAGCCTCCAGACTGCTCGGTGCTGAGTAAGAAGGGGGATTACCTCAAATACCACTACAA
TGCCTCACTCCTGGATGGGACTCTGCTGGACTCCACGTGGAACTTAGGCAAAACGTATAACATTGTGTTG
GGGTCTGGACAAGTCGTGCTGGGGATGGACATGGGTCTCAGAGAGATGTGCGTGGGAGAGAAGCGGACTG
TGATCATCCCGCCCCACCTGGGCTATGGAGAAGCTGGTGTGGATGGAGAGGTCCCTGGCAGTGCCGTCCT
AGTGTTTGACATCGAACTGCTGGAGCTTGTGTCTGGCCTTCCGGAGGGGTACATGTTCATATGGAATGGT
GAAGTGTCTCCCAACCTCTTTGAAGAAATCGACAGGGATGGCAATGGGGAAGTCCTCCTGGAGGAGTTCT
CAGAGTACATTCATGCCCAAGTGGCAACAGGCAAAGGGAAGCTGGCTCCTGGCTTTAATGCTGAAATGAT
CGTGAAGAATATGTTCACCAACCAGGACCGGAATGGAGATGGGAAGGTCACGGCTGAGGAATTTAAACTG
AAGGATCAGGAAGCCAAACATGATGAACTGTAA

Translation (570 aa):
MALGARGWRRRSLLLLLLWVTGQAAPVLGLAVSSELQIQQSFVPDECPRTVHSGDFVRYHYVGTFLDGQK
FDSSYDRDSTFNVFVGKGQLIAGMDQALVGMCVNERRLVTIPPNLAYGSEGVSGVIPPNSVLHFDVLLVD
IWNSEDQVHIQTYFKPPSCPRTIQVSDFVRYHYNGTFLDGTLFDSSHNRMKTYDTYVGIGWLIPGMDKGL
LGMCVGEKRIITVPPFLAYGEEGDGKDIPGQASLVFDVALLDLHNPKDTISIENKVVPENCERRSQSGDF
LRYHYNGTLLDGTLFDSSYSRNHTFDTYIGQGYVIPGMDEGLLGVCIGERRRIVVPPHLGYGEKGRGSIP
GSAVLVFDIHVIDFHNPSDSISITSHYKPPDCSVLSKKGDYLKYHYNASLLDGTLLDSTWNLGKTYNIVL
GSGQVVLGMDMGLREMCVGEKRTVIIPPHLGYGEAGVDGEVPGSAVLVFDIELLELVSGLPEGYMFIWNG
EVSPNLFEEIDRDGNGEVLLEEFSEYIHAQVATGKGKLAPGFNAEMIVKNMFTNQDRNGDGKVTAEEFKL
KDQEAKHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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