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Report for CCDS39490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39490.1 Public Mus musculus 6 Tax1bp1 23 108 98 CCDS HistoryNCBI Gene:52440Re-query CCDS DB by CCDS ID:39490.1Re-query CCDS DB by GeneID:52440See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080723.10 ENSMUSP00000079548.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080723.10Link to Ensembl Protein Viewer:ENSMUSP00000079548.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080723Re-query CCDS DB by Protein ID:ENSMUSP00000079548
Original member Current member NCBI NM_001355596.1 NP_001342525.1 Accepted alive Link to Nucleotide Sequence:NM_001355596.1Link to Protein Sequence:NP_001342525.1Re-query CCDS DB by Nucleotide ID:NM_001355596Re-query CCDS DB by Protein ID:NP_001342525Link to BLAST:NP_001342525.1
Original member Current member NCBI NM_025816.3 NP_080092.2 Accepted alive Link to Nucleotide Sequence:NM_025816.3Link to Protein Sequence:NP_080092.2Re-query CCDS DB by Nucleotide ID:NM_025816Re-query CCDS DB by Protein ID:NP_080092Link to BLAST:NP_080092.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342525.1 814 Q3UKC1 814 100% 0 0
NP_080092.2 814 Q3UKC1 814 100% 0 0

Chromosomal Locations for CCDS 39490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52721305 52721466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52727199 52727301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52729281 52729468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52733191 52733349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52736850 52736998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52737082 52737172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52739544 52739729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52741951 52742175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52742692 52742838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52744222 52744354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52746670 52746770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52751085 52751210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52753305 52753376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52757554 52757728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52758213 52758355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52765021 52765103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52765873 52766074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGACATCCTTTCAAGAAGTCCAATTGCAGACTTCCAATTTTGCCCATGTCATCTTTCAAAATGTGGCTA
AAAGTTACCTTCCTAATGCACACTTGGAGTGCCATTACACCTTAACTCCGTATATCCATCCACACTCCAA
AGATTGGGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACATTATGTGGAAGGATCAACAGTCAATTGTGTACTAGCATTTCAAGGATATTACCTTCCAA
ATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGGAGCAAGTACTCC
TTTCCAGTTCCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGATGAAGGCAATTCCGATATG
TTGGTGGTAACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAGAAGACCCTGAAAGAAAAAGAAGAAT
TGTTAAAGTTGATAGCTGTTCTTGAAAAAGAAACAGCACAGCTGAGAGAACAAGTTGGAAGAATGGAGAG
AGAACTGAGCCAGGAGAAAGGGCGGTGTGAGCAATTGCAGGCTGAGCAGAAGGGCCTTCTTGAAGTATCA
CAAAGTTTGAGAGTGGAAAACGAAGAGTTTATGAAGAGATACAGTGATGCTACAGCTAAAGTTCAACAGC
TTGAAGAGGACATTGTATCAGTGACACATAAAGCCATTGAAAAAGAAACTGACCTAGACAGTTTGAAGGA
TAAGCTCAGGAAGGCACAGCATGAGAGAGAGCAGCTTGAATGTCAGCTGCAGACAGAAAAGGATGAGAAG
GAGCTGTATAAGGTACATTTGAAGAATACAGAAATAGAAAATACGAAGCTTGTGTCAGAGATACAGACTT
TAAAGAATTTAGATGGAAACAAAGAAAGCATGATTACCCATTTCAAAGAAGAGATTAGCAAACTGCAGTC
CTGCTTGGCTGACAAGGAAAATTTGTACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAGATACATTA
TTTTTAAAGGAGCAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGAACTTATCTTTCTGA
CTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACTATGGCAGATCTGCATACTGCACGCTTAGA
AAATGAGAGAGTGAAGAAGCAGCTAGCCGACACACTGGCAGAGCTGCAGCTACATGCTGTAAAGAAAGAT
CAGGAAAAGACTGATACCCTGGAACATGAACTGAGAAGAGAAGTTGAAGATCTGAAACTCCGTCTTCAGA
TGGCTGCAGATCATTACAGAGAAAAGTTTAAGGAGTGCCAGAGGCTCCAAAAGCAAATAAACAAACTTTC
AGACCAGGCAGCGAGTACTAACAGTGTCTTCACAAAGAAAATGGGGAGTCAGCAGAAAGTGAACGATGCT
TCAATAAATACAGACCCGGCTGCCTCTACTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCGTCATGTG
CAGAGACAGGCTTTGATATGTCAACAAAGGATCATGTCTGTGAAATGACTAAAGAAATTGCTGAGAAAAT
AGAAAAGTATAATAAGTGTAAACAACTCTTGCAGGATGAGAAAACTAAGTGCAATAAATACGCTGAAGAA
CTTGCCAAAATGGAGCTGAAGTGGAAAGAACAAGTGAAAATTGCTGAAAATGTAAAACTTGAACTAGCTG
AAGTAGAGGATAACTACAAAGTTCAGCTGGCGGAGAAAGAGAAAGAAATAAATGGTCTGGCTTCATATTT
GGAAAATCTCTCCAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAATTGGAAGGC
CAGAGCCCTCAACAAGTCTCAAGGTGTCTCAACACATGTTCTGAGCAAAATGGGCTCCTTCCTCCACTGT
CAAGTGCACAGCCAGTTCTTCAGTATGGCAACCCTTACTCAGCACAGGAAACAAGAGATGGAGCAGATGG
TGCTTTTTATCCAGATGAAATCCAAAGGCCACCTGTGCGAGTCCCATCTTGGGAAGACAATGTTGTCTGT
AGCCAGCCTGCTCGAAACCTTAGCCGGCCGGATGGTTTAGAGGACCCCGAAGACAGCAGAGAAGACGAAA
ATGTGCCCATTCCTCCTGATCCAGCAAACCAGCACTTACGTAGTCATGGAGCAGGCTTTTGCTTTGATTC
CAGCTTTGATGTTCACAAGAAATGTCCCCTCTGTGAATTAATGTTCCCTCCTAACTACGATCAGACCAAA
TTTGAAGAACACGTTGAAAGTCACTGGAAGGTGTGTCCAATGTGCAGCGAGCAGTTCCCGCCGGACTACG
ACCAGCAGGGGTTTGAAAGGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAG

Translation (814 aa):
MTSFQEVQLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYYTFLWSP
MPEHYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEELLTMEDEGNSDM
LVVTTKAGLLELKIEKTLKEKEELLKLIAVLEKETAQLREQVGRMERELSQEKGRCEQLQAEQKGLLEVS
QSLRVENEEFMKRYSDATAKVQQLEEDIVSVTHKAIEKETDLDSLKDKLRKAQHEREQLECQLQTEKDEK
ELYKVHLKNTEIENTKLVSEIQTLKNLDGNKESMITHFKEEISKLQSCLADKENLYRALLLTTSNKEDTL
FLKEQLRKAEEQVQATRQELIFLTKELSDAVNVRDKTMADLHTARLENERVKKQLADTLAELQLHAVKKD
QEKTDTLEHELRREVEDLKLRLQMAADHYREKFKECQRLQKQINKLSDQAASTNSVFTKKMGSQQKVNDA
SINTDPAASTSASAVDVKPAASCAETGFDMSTKDHVCEMTKEIAEKIEKYNKCKQLLQDEKTKCNKYAEE
LAKMELKWKEQVKIAENVKLELAEVEDNYKVQLAEKEKEINGLASYLENLSREKELTKSLEDQKGRKLEG
QSPQQVSRCLNTCSEQNGLLPPLSSAQPVLQYGNPYSAQETRDGADGAFYPDEIQRPPVRVPSWEDNVVC
SQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRSHGAGFCFDSSFDVHKKCPLCELMFPPNYDQTK
FEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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