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Report for CCDS39448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39448.1 Public Mus musculus 6 Lrrc4 23 108 98 CCDS HistoryNCBI Gene:192198Re-query CCDS DB by CCDS ID:39448.1Re-query CCDS DB by GeneID:192198See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062304.6 ENSMUSP00000062158.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062304.6Link to Ensembl Protein Viewer:ENSMUSP00000062158.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062304Re-query CCDS DB by Protein ID:ENSMUSP00000062158
Original member Current member NCBI NM_138682.2 NP_619623.2 Accepted alive Link to Nucleotide Sequence:NM_138682.2Link to Protein Sequence:NP_619623.2Re-query CCDS DB by Nucleotide ID:NM_138682Re-query CCDS DB by Protein ID:NP_619623Link to BLAST:NP_619623.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619623.2 652 Q99PH1 652 100% 0 0

Chromosomal Locations for CCDS 39448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28829656 28831614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGAAGCTCTTGTGGCAGGTAACTGTGCACCACACCTGGAATGCCGTCCTGCTTCCCGTCGTCTACCTCA
CGGCGCAAGTGTGGATTCTGTGTGCAGCCATCGCTGCTGCCGCTTCAGCCGGGCCCCAAAACTGCCCCTC
CGTCTGTTCCTGCAGTAACCAGTTCAGCAAGGTGGTGTGCACCCGCCGGGGACTCTCTGAGGTCCCACAG
GGTATTCCTTCCAACACCCGGTATCTCAACCTCATGGAAAACAACATCCAGATGATTCAGGCCGACACCT
TCAGGCACCTCCATCACCTGGAGGTCCTGCAGCTGGGCAGGAACTCCATCAGGCAGATAGAGGTGGGGGC
CTTCAATGGCCTCGCCAGTCTCAACACTCTGGAACTGTTCGACAACTGGCTGACAGTCATCCCCAGTGGG
GCCTTTGAGTACCTGTCCAAACTGCGGGAGCTCTGGCTGCGAAACAATCCCATTGAGAGCATCCCTTCTT
ATGCCTTCAACCGGGTGCCCTCCCTCATGCGTCTGGACTTGGGGGAACTCAAGAAGCTGGAGTATATCTC
TGAGGGGGCTTTTGAGGGGCTGTTCAACCTCAAGTACCTGAACTTGGGCATGTGCAACATTAAGGATATG
CCCAATCTTACACCCCTGGTGGGGCTCGAGGAGCTTGAGATGTCAGGGAACCACTTTCCTGAGATCAGGC
CTGGGTCCTTCCATGGCCTAAGCTCCCTCAAAAAACTGTGGGTGATGAACTCACAGGTCAGCCTGATTGA
GCGGAATGCTTTTGACGGACTGGCTTCCCTCGTGGAACTCAACTTAGCCCACAATAACCTCTCATCTTTG
CCCCATGACCTCTTCACACCCCTGAGATACCTGGTGGAGTTGCACCTACACCACAATCCTTGGAACTGTG
ATTGTGATATTCTGTGGCTGGCTTGGTGGCTTCGGGAGTATATCCCAACCAATTCCACCTGCTGTGGCCG
CTGTCATGCTCCCATGCACATGCGAGGCCGCTACCTGGTAGAGGTGGACCAGGCTGCCTTTCAGTGCTCT
GCCCCTTTCATCATGGATGCACCCCGGGACCTCAATATCTCTGAGGATCGGATGGCAGAACTGAAGTGTC
GGACTCCCCCTATGTCCTCTGTGAAGTGGTTGCTGCCCAATGGGACAGTGCTCAGCCACGCCTCCCGGCA
TCCCCGGATCTCTGTTCTCAATGATGGCACCTTGAACTTTTCTCGTGTGCTGCTCATAGACACTGGAGTA
TACACATGCATGGTGACCAATGTGGCAGGCAACTCCAATGCCTCGGCCTACCTCAATGTGAGCTCGGCCG
AGCTCAACACCCCCAACTTCAGCTTCTTCACCACTGTAACAGTGGAAACCACAGAGATATCACCTGAGGA
CATAACACGGAAGTACAAGCCTGTTCCCACCACATCCACTGGTTACCAGCCGGCATATACCACCTCTACC
ACGGTGCTCATTCAGACCACCCGTGTGCCCAAGCAGGTGCCAGTACCCTCCACAGATACCACTGACAAGA
TGCAGACCAGCCTGGATGAAGTCATGAAGACCACCAAGATCATCATTGGCTGCTTTGTGGCAGTGACTCT
CCTAGCTGCTGCCATGTTGATTGTCTTCTATAAACTTCGCAAGCGGCACCAGCAGCGGAGTACAGTCACA
GCTGCCAGGACAGTAGAGATTATCCAGGTGGATGAAGACATCCCAGCAGCAGCACCTGCAGCAGCAACAG
CAGCTCCGTCCGGTGTATCAGGTGAGGGGGCAGTAGTGTTGCCCACAATACATGACCATATTAACTACAA
CACCTACAAACCAGCACATGGGGCCCACTGGACAGAAAACAGCCTGGGGAACTCTCTGCACCCCACAGTC
ACCACTATCTCTGAACCTTATATAATTCAGACCCATACCAAGGACAAGGTACAGGAAACTCAAATATGA

Translation (652 aa):
MKLLWQVTVHHTWNAVLLPVVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQ
GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG
AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM
PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL
PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQAAFQCS
APFIMDAPRDLNISEDRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSRVLLIDTGV
YTCMVTNVAGNSNASAYLNVSSAELNTPNFSFFTTVTVETTEISPEDITRKYKPVPTTSTGYQPAYTTST
TVLIQTTRVPKQVPVPSTDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVT
AARTVEIIQVDEDIPAAAPAAATAAPSGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTV
TTISEPYIIQTHTKDKVQETQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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