NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39421.1 Public Mus musculus 6 Slc25a13 23 108 98 CCDS HistoryNCBI Gene:50799Re-query CCDS DB by CCDS ID:39421.1Re-query CCDS DB by GeneID:50799See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015256.14 ENSMUSP00000015256.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015256.14Link to Ensembl Protein Viewer:ENSMUSP00000015256.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015256Re-query CCDS DB by Protein ID:ENSMUSP00000015256
Original member Current member EBI ENSMUST00000188414.3 ENSMUSP00000139571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188414.3Link to Ensembl Protein Viewer:ENSMUSP00000139571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188414Re-query CCDS DB by Protein ID:ENSMUSP00000139571
Original member NCBI NM_015829.3 NP_056644.1 Updated not alive Link to Nucleotide Sequence:NM_015829.3Link to Protein Sequence:NP_056644.1Re-query CCDS DB by Nucleotide ID:NM_015829Re-query CCDS DB by Protein ID:NP_056644
Current member NCBI NM_015829.4 NP_056644.1 Accepted alive Link to Nucleotide Sequence:NM_015829.4Link to Protein Sequence:NP_056644.1Re-query CCDS DB by Nucleotide ID:NM_015829Re-query CCDS DB by Protein ID:NP_056644Link to BLAST:NP_056644.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056644.1 676 Q9QXX4 676 100% 0 0

Chromosomal Locations for CCDS 39421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 6042146 6042332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6042559 6042649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6042741 6042899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6052765 6052903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6073402 6073542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6095147 6095227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6096670 6096722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6109181 6109339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6109937 6110024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6113938 6114022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6114225 6114318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6114970 6115108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6117099 6117245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6131629 6131768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6152408 6152523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6180971 6181113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6191264 6191317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6216996 6217010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGCGGCCGCCAAGGTGGCTTTAACCAAGAGAGCCGATCCAGCTGAGCTTAAAGCAATATTTTTGAAGT
ATGCGAGCATTGAAAAAAATGGTGAATTTTTTATGTCTCCTCATGACTTTGTCACTCGGTATTTGAATAT
TTTTGGAGAAAGCCAGCCCAACCCGAAAACTGTGGAACTTTTAAGTGGTGTAGTGGATCAGACCAAAGAT
GGGTTAATATCCTTCCAAGAGTTTGTAGCCTTTGAGTCTGTCCTGTGTGCTCCGGATGCCTTGTTTATGG
TGGCGTTCCAGCTGTTTGACAAAGCTGGCAAAGGAGAGGTTACTTTTGAGGATGTCAAGCAAATTTTTGG
ACAGACTACAATTCATCAACATATTCCATTTAACTGGGATTCAGAATTTGTGCAGCTACATTTTGGAAAA
GAAAGAAAAAGGCACCTTACATATGCGGAGTTCACTCAGTTTTTGTTGGAAATACAGTTGGAGCACGCGA
AGCAAGCCTTTGTGCAACGAGACAATGCCAAGACAGGCAAAGTCTCAGCCATTGACTTCCGGGACATCAT
GGTCACCATCCGTCCCCATGTCCTGACGCCTTTTGTTGAGGAATGTCTAGTAGCTGCTGCTGGAGGCACT
AGGTCCCATCAAGTTAGCTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAACTCATTA
GGAAGATCTACAGTACTCTGGCTGGCAACAGGAAAGACGTGGAGGTGACTAAGGAGGAGTTCGCTTTGGC
AGCCCAGAAGTTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCAGATTTATATGAG
CCGAGGGGGCGCATGACCTTAGCAGACATTGAGCGGATCGCCCCTCTAGAGGAAGGAATGTTACCCTTCA
ACTTGGCCGAGGCCCAGAGGCAGCAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTGCAGCTCGC
AGAGTCAGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAGCTGTCGGAGCCACTGCCGTGTATCCTATC
GATCTTGTAAAGACTCGAATGCAGAACCAGAGATCAACCGGCTCTTTTGTGGGCGAGCTCATGTATAAAA
ACAGCTTTGACTGCTTTAAGAAGGTGCTCCGCTACGAAGGCTTCTTTGGACTGTACCGAGGTTTGCTGCC
ACAGTTACTGGGAGTCGCCCCGGAGAAGGCCATAAAACTTACAGTGAACGATTTTGTGAGAGATAAATTT
ATGCACAAAGATGGCTCCGTCCCACTTTTGGCAGAGATTTTTGCTGGAGGCTGTGCTGGAGGCTCCCAAG
TGATTTTCACAAATCCTTTAGAGATTGTGAAAATCCGCTTACAAGTGGCCGGAGAGATCACCACTGGCCC
CCGAGTCAGCGCCCTGTCGGTGGTACGAGACCTGGGGTTCTTTGGCATCTACAAGGGCGCCAAAGCATGC
TTCCTGAGGGACATTCCTTTCTCAGCCATCTACTTCCCGTGCTATGCCCACGTGAAGGCTTCCTTTGCAA
ATGAAGACGGGCAGGTCAGCCCCGGAAGCCTGCTCTTAGCCGGTGCTATTGCTGGTATGCCTGCGGCATC
TTTAGTGACCCCTGCTGATGTTATCAAGACTAGATTACAGGTGGCTGCCCGGGCTGGCCAAACCACTTAC
AACGGTGTGACCGACTGCTTCAGAAAGATACTTCGAGAAGAGGGCCCCAAAGCATTGTGGAAAGGAGTTG
CTGCTCGTGTCTTCCGCTCCTCGCCCCAGTTTGGTGTCACCTTGCTTACGTATGAATTGCTGCAGCGGTG
GTTCTATGTCGATTTTGGAGGCGTGAAGCCCGTGGGATCTGAGCCGGTTCCTAAATCCCGGATTACTCTG
CCCGCTCCCAATCCTGACCACGTAGGGGGCTACAAACTGGCCGTTGCCACATTCGCAGGGATTGAGAACA
AATTTGGACTTTACCTACCTCTCTTTAAGCCATCAGCATCTACCTCAAAAGTGACTGCTGGGGACTCCTA
G

Translation (676 aa):
MAAAKVALTKRADPAELKAIFLKYASIEKNGEFFMSPHDFVTRYLNIFGESQPNPKTVELLSGVVDQTKD
GLISFQEFVAFESVLCAPDALFMVAFQLFDKAGKGEVTFEDVKQIFGQTTIHQHIPFNWDSEFVQLHFGK
ERKRHLTYAEFTQFLLEIQLEHAKQAFVQRDNAKTGKVSAIDFRDIMVTIRPHVLTPFVEECLVAAAGGT
RSHQVSFSYFNGFNSLLNNMELIRKIYSTLAGNRKDVEVTKEEFALAAQKFGQVTPMEVDILFQLADLYE
PRGRMTLADIERIAPLEEGMLPFNLAEAQRQQKASGDAARPFLLQLAESAYRFGLGSIAGAVGATAVYPI
DLVKTRMQNQRSTGSFVGELMYKNSFDCFKKVLRYEGFFGLYRGLLPQLLGVAPEKAIKLTVNDFVRDKF
MHKDGSVPLLAEIFAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALSVVRDLGFFGIYKGAKAC
FLRDIPFSAIYFPCYAHVKASFANEDGQVSPGSLLLAGAIAGMPAASLVTPADVIKTRLQVAARAGQTTY
NGVTDCFRKILREEGPKALWKGVAARVFRSSPQFGVTLLTYELLQRWFYVDFGGVKPVGSEPVPKSRITL
PAPNPDHVGGYKLAVATFAGIENKFGLYLPLFKPSASTSKVTAGDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH