NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39373.1 Public Mus musculus 5 Ankrd61 23 108 98 CCDS HistoryNCBI Gene:66729Re-query CCDS DB by CCDS ID:39373.1Re-query CCDS DB by GeneID:66729See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110717.8 ENSMUSP00000106345.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110717.8Link to Ensembl Protein Viewer:ENSMUSP00000106345.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110717Re-query CCDS DB by Protein ID:ENSMUSP00000106345
Original member Current member NCBI NM_025732.4 NP_080008.1 Accepted alive Link to Nucleotide Sequence:NM_025732.4Link to Protein Sequence:NP_080008.1Re-query CCDS DB by Nucleotide ID:NM_025732Re-query CCDS DB by Protein ID:NP_080008Link to BLAST:NP_080008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080008.1 421 Q9CQM6-1 421 100% 0 0

Chromosomal Locations for CCDS 39373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143890890 143891844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143893536 143893633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143894772 143894984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGGAAACATAACCAAGAGAGGAAGCAGAGACCTGGTGGCTGACGGTGCCACGTTGGTGGAGGAGAGCC
TGGCCACGACCCTGCACTCTAAACTGTATGAGGCCATCATCAAGGAAGACTGTAACACCATCAAGACACT
TCTCAGAAACCACCCTGTCAACCAGCCCCTGACCATCCTGGCCAACTCCACCCGTTACAGACTACTGAGC
CAGCAGACACAGCCTATCTTTCCCATCCATCTGGCCGCCGAGTACCGCAAGCCACAAAGTTTGCTTTGCT
TGTTACAACACGGTGCTGACCCAGAAGTAAGGGACGCCCAAGGCTTCACTACCCTTCACCTGATGCTGCT
TAACTGGCCAGCCTCTTCTACCACTTGGTCCAAACCCAGCACTCAGATCCAAAAGATCCTGATGGACATT
CAGAACAACGCTGTCTTGTGTCTGTGCATTTTGTGTGACCACGGAGCTCAAGTTAATGCCCGGGTAGACA
ACAGCAACAAGCATTCAGCCCTCCACCTGGCCATAATACACGGGACCTACCCAGTTCTCTCCTTTTTGGC
TCAAAATGGTGCCCAGGTCAATGCTACTAATGAATCCAGCATGACGCCCCTCCACATGGCTGCAGACATA
CTGAACAAAAACATGATAGAGACACTCATTGCCTTTGGGGCCAATGTGAACTGTGCCATCTCATCTACCG
GAAACACAGCTCTGAAGCTGGCCGTGTGTACTGCATCGAGCAAAGTCGGCCGACTGCTGGCAGCGGGGGT
GGGCTGCATCCGTCTGCTGCTAAATAACGGAGCCCAGGTCAATGCCCAGGACCATGAAGGCCAGACAGCT
CTGCACGAGGCATGCTTTGGAGGCAGAGAAGCGATCATCAGTCTCTTGCTGGAATTTGAGGCAAACGTTA
ACATTTTAACAAGAAATGGGGAGTCTCCCATTTACATGTACCTTCAGCGCAGTTCCAACATCAGAGACAG
ATCGCTTCTGGCCAGACTACTTTACCGCACTTATCCTTTAAGACTGAGCAATAAACAGGGGATTCTACCA
GCAGGAATCATGCTGCCAGAATACCAGCTCCTAAGGGAAACCCTAGTAAAGTTATCAAAAAAACCTTTAA
CCCTCGAGGCCATCTGTAAGAGAAGCATCAGGAATGTTTATGGGGAGAAGTACAAATTCCACCTCGAGAA
GCTCCTCCCGGCAAAGCTCTGGAACTCCATATATGGCATCTATGACCTCACCTACCTGCTCAAAGGAGAG
CCATGA

Translation (421 aa):
MGNITKRGSRDLVADGATLVEESLATTLHSKLYEAIIKEDCNTIKTLLRNHPVNQPLTILANSTRYRLLS
QQTQPIFPIHLAAEYRKPQSLLCLLQHGADPEVRDAQGFTTLHLMLLNWPASSTTWSKPSTQIQKILMDI
QNNAVLCLCILCDHGAQVNARVDNSNKHSALHLAIIHGTYPVLSFLAQNGAQVNATNESSMTPLHMAADI
LNKNMIETLIAFGANVNCAISSTGNTALKLAVCTASSKVGRLLAAGVGCIRLLLNNGAQVNAQDHEGQTA
LHEACFGGREAIISLLLEFEANVNILTRNGESPIYMYLQRSSNIRDRSLLARLLYRTYPLRLSNKQGILP
AGIMLPEYQLLRETLVKLSKKPLTLEAICKRSIRNVYGEKYKFHLEKLLPAKLWNSIYGIYDLTYLLKGE
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH