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Report for CCDS39328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39328.1 Public Mus musculus 5 Cux1 23 108 98 CCDS HistoryNCBI Gene:13047Re-query CCDS DB by CCDS ID:39328.1Re-query CCDS DB by GeneID:13047See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004097.15 ENSMUSP00000004097.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004097.15Link to Ensembl Protein Viewer:ENSMUSP00000004097.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004097Re-query CCDS DB by Protein ID:ENSMUSP00000004097
Original member NCBI NM_009986.4 NP_034116.3 Updated not alive Link to Nucleotide Sequence:NM_009986.4Link to Protein Sequence:NP_034116.3Re-query CCDS DB by Nucleotide ID:NM_009986Re-query CCDS DB by Protein ID:NP_034116
Current member NCBI NM_009986.5 NP_034116.3 Accepted alive Link to Nucleotide Sequence:NM_009986.5Link to Protein Sequence:NP_034116.3Re-query CCDS DB by Nucleotide ID:NM_009986Re-query CCDS DB by Protein ID:NP_034116Link to BLAST:NP_034116.3

Chromosomal Locations for CCDS 39328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136274791 136275466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136279430 136279694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136282868 136283056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136286761 136287063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136304723 136304779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136305449 136305614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136307759 136308594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136309747 136309848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136311495 136311560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136312643 136313008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136314307 136314403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136315999 136316047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136319781 136319839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136326750 136326938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136332624 136332728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136340089 136340137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136360002 136360068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136363259 136363335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136370118 136370241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136373322 136373459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136392315 136392393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136407980 136408027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136485741 136485851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136567178 136567240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4281 nt):
ATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGAGAGAAC
TTGATGCCACCGCAACAGTATTGGCAAACAGGCAAGATGAGAGCGAACAGTCCAGAAAGCGGCTCATTGA
GCAGAGCCGAGAATTCAAGAAGAACACTCCAGAGGATTTACGCAAGCAGGTAGCACCACTGCTAAAGAGC
TTCCAAGGGGAGATTGATGCACTGAGTAAAAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGACTGTGTACA
AGAGACTAATTGATGTTCCAGATCCGGTACCAGCCCTGGACGTCGGGCAACAGCTGGAAATAAAAGTGCA
GCGTCTACACGACATTGAAACAGAGAACCAGAAACTTAGGGAAACACTAGAAGAGTACAACAAGGAGTTT
GCTGAAGTGAAAAATCAAGAGGTTACGATAAAAGCACTTAAGGAGAAAATCCGAGAATACGAGCAGACCC
TGAAGAGTCAGGCCGAGACCATTGCTCTGGAGAAAGAGCAGAAGCTACAAAATGATTTTGCAGAGAAGGA
GAGAAAGCTGCAAGAGACACAGATGTCCACCACCTCAAAACTGGAGGAAGCTGAGCACAAACTCCAGACT
CTGCAAACAGCCCTGGAAAAAACTCGAACAGAATTATTTGACCTGAAAACCAAATATGATGAAGAAACTA
CTGCAAAGGCCGATGAGATCGAGATGATCATGACCGACCTTGAACGAGCCAACCAGAGGGCAGAGGTGGC
ACAGAGAGAAGCAGAGACTTTAAGGGAACAGCTCTCATCGGCCAACCACTCTCTCCAACTGGCCTCGCAG
ATCCAGAAGGCTCCAGATGTGGAGCAGGCCATAGAGGTGCTGACCCGATCCAGCCTAGAAGTAGAGTTGG
CTGCCAAAGAGCGGGAGATCGCCCAGCTGGTGGAAGATGTGCAGCGACTCCAGGCCAGCCTCACCAAGCT
ACGTGAGAATTCCGCCAGCCAGATCTCACAGCTGGAGCAGCAACTGAATGCCAAGAATAGCACACTCAAA
CAACTGGAAGAAAAACTCAAAGGCCAGGCTGACTATGAAGAAGTGAAGAAAGAGCTGAACACCCTGAAGT
CCATGGAGTTTGCACCATCGGAGGGAGCAGGGACACAGGACTCTACCAAGCCCCTGGAGGTTTTACTCCT
GGAGAAGAACCGCTCGCTGCAGTCCGAGAATGCCACGCTGCGCATCTCCAACAGTGACCTGAGCGGTCCT
TACAGCACAAACTCCATATCTTCCCCAAGTCCATTACAACAAAGCCCAGATGTAAATGGCATGGCCCCAT
CTCCCAGCCAATCAGAAAGTGCTGGGAGCATCTCAGAGGGCGAGGAAATTGATACCGCAGAGATCGCCCG
GCAGGTCAAAGAGCAGCTCATCAAGCACAACATTGGCCAGCGCATCTTCGGACATTACGTCCTGGGACTG
TCGCAAGGCTCTGTGAGCGAGATCCTGGCCCGGCCCAAGCCCTGGAACAAGCTGACTGTCCGTGGCAAGG
AGCCATTCCACAAGATGAAGCAGTTCCTGTCTGATGAGCAGAACATCCTGGCACTCCGTAGCATCCAAGG
CAGACAGAGAGAGAATCCAGGCCAGAGCCTGAACAGACTCTTTCAGGAAGTACCGAAACGAAGAAATGGG
TCTGAAGGTAACATCACTACCCGGATCCGAGCATCTGAGACTGGTTCTGATGAAGCCATCAAGTCCATCC
TGGAACAAGCCAAGAGGGAACTACAAGTGCAGAAAACCGCTGAGCCAGTCCAGACATCTTCCACGTCCAG
CAGTGGGAACTCTGACGATGCCATCCGCTCCATCCTACAGCAGGCCCGCCGGGAAATGGAGGCCCAGCAG
GCTGCCCTTGACCCTGCCTTAAAGCCAGCACCACTGTCCCAGCCCGACCTCACCATCCTCACCCCCAAGC
ACCTGTCTGCCTCACCCATGTCTACTGTGTCCACTTACCCGCCTCTTGCTATCTCCCTGAAGAAAACCCC
TGCAGCACCTGAGACCAGTACCGCAGCCTTGCCCAGTGCCCCAGCTCTCAAAAAAGAGGCTCAGGATGTA
CCCACACTGGACCCACCAGGATCAGCTGATGCTGCCCAGGGAGTGCTGAGGCCGATGAAGAGTGAGCTAG
TCCGTGGCAGCACCTGGAAGGATCCCTGGTGGAGCCCTATACAGCCTGAAAGAAGAAACCTCACTTCTTC
CGAAGAGACCAAGGCCGATGAAACAACTGCAAGCGGGAAAGAAAGGGCAGGCAGCAGCCAGCCTCGGGCT
GAGCGCAGCCAGCTTCAGGGACCCTCAGCATCCGCAGAGTACTGGAAAGAGTGGCCAAGCGCTGAGTCCC
CATACTCCCAGAGCTCAGAGCTGAGCCTCACTGGAGCCAGCCGCAGTGAGACACCCCAGAATAGCCCTCT
GCCCTCTTCCCCAATTGTGCCCATGGCGAAGCCAGCCAAGCCTTCAGTGCCCCCGCTGACTCCTGAGCAG
TACGAGGTCTACATGTATCAGGAAGTGGACACTATCGAGCTCACTCGGCAGGTCAAAGAGAAGCTGGCCA
AGAACGGCATTTGCCAGAGGATCTTTGGGGAGAAGGTACTGGGCCTGTCCCAGGGCAGTGTCAGCGACAT
GCTTTCAAGGCCAAAACCATGGAGCAAACTGACCCAGAAAGGCCGAGAACCCTTCATCCGGATGCAGCTC
TGGCTGAATGGAGAGCTGGGCCAAGGTGTTCTGCCAGTGCAAGGGCAACAGCAAGGGCCAGTCCTCCACT
CCGTGGCGTCTCTGCAGGACCCCCTCCAGCAGGGCTGTGTGAGCTCAGAAAGCACTCCAAAGACCTCTGC
CAGCTGCAGCCCTGCCCCTGAGTCCCCAATGAGTTCCAGCGAATCTGTGAAGAGTCTCACCGAGCTGGTC
CAGCAGCCCTGTCCCGCCATTGAGACCAGTAAAGAAGGCAAACCACCAGAGCCCAGCGACCCGCCTGCCT
CAGACTCCCAGCCCACAACACCGCTGCCTCTCTCTGGACACTCAGCCCTCAGCATCCAAGAATTAGTAGC
CATGTCTCCTGAGCTGGACACGTATGGCATAACCAAGAGGGTCAAAGAGGTGCTGACAGACAACAACCTC
GGTCAGCGCTTATTTGGGGAGACCATTTTGGGGCTCACCCAGGGTTCTGTCTCCGACCTCCTTGCCCGCC
CAAAGCCTTGGCATAAGCTTAGTCTGAAAGGACGGGAACCCTTTGTCCGCATGCAGCTATGGCTGAACGA
CCCCAACAATGTGGAGAAGCTGATGGATATGAAGCGGATGGAGAAGAAAGCCTACATGAAGAGGCGACAC
AGCTCTGTCAGTGACAGTCAGCCTTGTGAGCCCCCCTCTGTGGGTATTGACTATAGCCAAGGCGCCAGCC
CCCAGCCACAACACCAGCTGAAGAAACCTCGAGTGGTGCTGGCTCCAGAGGAGAAGGAAGCGCTGAAGCG
AGCATATCAGCAGAAGCCATACCCATCACCAAAAACCATCGAGGAACTTGCCACACAACTCAACCTGAAG
ACCAGCACCGTCATCAACTGGTTCCATAATTACAGGTCTCGGATCCGCAGAGAACTGTTCATTGAGGAGA
TTCAAGCTGGAAGCCAGGGCCAGGCTGGTGCCAGCGACTCACCTTCAGCTCGAAGTAGCCGCGCTGCACC
CAGCTCGGAAGGTGACAGCTGTGACGGCGTGGAAGCCACCGACGCCGAGGAGCCAGGTGGCAACATAGTG
GCCACCAAGTCTCAGGGAGGGCTGGCAGAGGTGGCCGCAGCCCCGGCAGACCGGGAAGAAGCGACGCAGC
CGGCGGAGAAGGCGAAGGCACAGCCACTATGCTCGGGGACCCCAGGACAGGACGACGGTGAAGACGCAAG
CCGGCCTAGGCCACTTCCCGAGGGCCTCGCCGACGCCCCAGCGCCTGTGCCAAGCCTCGCCGCACCCGCG
GCCGGAGAGGACGCCGCTACCTCAGCCACTGCCCCGGCCACGGCCACCGAGGCCCCCGGGGCGGCCAGGG
CGGGCCCTGCCGAGAGGAGTTCTGCGTTGCCAAGCACCAGCGCGCCTGCCAACGCGCCTGCGCGAAGGCC
TAGCTCACTGCAGAGCCTCTTCGGTCTGCCCGAGGCCGCGGGCGCCCGGGACAACCTGGTGCGGAAGAAG
AAGGCTGCGAACTTGAACAGCATCATCCACCGCCTGGAGAAGGCTGCCAGCCGGGAGGAGCCCATCGAAT
GGGAGTTCTGA

Translation (1426 aa):
MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKS
FQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEF
AEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT
LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ
IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLK
QLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRISNSDLSGP
YSTNSISSPSPLQQSPDVNGMAPSPSQSESAGSISEGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGL
SQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALRSIQGRQRENPGQSLNRLFQEVPKRRNG
SEGNITTRIRASETGSDEAIKSILEQAKRELQVQKTAEPVQTSSTSSSGNSDDAIRSILQQARREMEAQQ
AALDPALKPAPLSQPDLTILTPKHLSASPMSTVSTYPPLAISLKKTPAAPETSTAALPSAPALKKEAQDV
PTLDPPGSADAAQGVLRPMKSELVRGSTWKDPWWSPIQPERRNLTSSEETKADETTASGKERAGSSQPRA
ERSQLQGPSASAEYWKEWPSAESPYSQSSELSLTGASRSETPQNSPLPSSPIVPMAKPAKPSVPPLTPEQ
YEVYMYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQL
WLNGELGQGVLPVQGQQQGPVLHSVASLQDPLQQGCVSSESTPKTSASCSPAPESPMSSSESVKSLTELV
QQPCPAIETSKEGKPPEPSDPPASDSQPTTPLPLSGHSALSIQELVAMSPELDTYGITKRVKEVLTDNNL
GQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMDMKRMEKKAYMKRRH
SSVSDSQPCEPPSVGIDYSQGASPQPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLK
TSTVINWFHNYRSRIRRELFIEEIQAGSQGQAGASDSPSARSSRAAPSSEGDSCDGVEATDAEEPGGNIV
ATKSQGGLAEVAAAPADREEATQPAEKAKAQPLCSGTPGQDDGEDASRPRPLPEGLADAPAPVPSLAAPA
AGEDAATSATAPATATEAPGAARAGPAERSSALPSTSAPANAPARRPSSLQSLFGLPEAAGARDNLVRKK
KAANLNSIIHRLEKAASREEPIEWEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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