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Report for CCDS39271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39271.1 Public Mus musculus 5 Rsrc2 23 108 98 CCDS HistoryNCBI Gene:208606Re-query CCDS DB by CCDS ID:39271.1Re-query CCDS DB by GeneID:208606See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39271.1
This CCDS representation has an inferred exon combination due to the lack of full-length transcript support for this gene in mouse. This representation is mostly supported by mouse BC008229.1, which lacks the last three exons that are inferred from other partial mouse transcripts, and by full-length orthologous transcripts, e.g., human AB212664.1 or BC067773.1, or cow BT030691.1.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182309.7 ENSMUSP00000138691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182309.7Link to Ensembl Protein Viewer:ENSMUSP00000138691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182309Re-query CCDS DB by Protein ID:ENSMUSP00000138691
Original member Current member NCBI NM_001005525.2 NP_001005525.1 Accepted alive Link to Nucleotide Sequence:NM_001005525.2Link to Protein Sequence:NP_001005525.1Re-query CCDS DB by Nucleotide ID:NM_001005525Re-query CCDS DB by Protein ID:NP_001005525Link to BLAST:NP_001005525.1

Chromosomal Locations for CCDS 39271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123729177 123729356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123730455 123730544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123731037 123731269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123733556 123733635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123736559 123736681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123739492 123739695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123740672 123740862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123743638 123743678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123744955 123745111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123749289 123749294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGCGGCTATTGATACAGAACGAGATGGATTAGCCCTAGAAAAGACATCACCGGATAGAGAAAAGAAAA
AAGAGCAGTCAGATATATCTATTTCTCCTAGAGCCTCAAAACATCATTATTCAAGGTCGAGGTCAAGGTC
AAGAGAAAGAAAACGAAAATCAGATGATGGAAGGAAGCACAGGAGCCGGAGCAGAAGCAAAGAGGGAAGA
AGACATGAGTCCAAAGATAAGTCCTCTAAGAGACACAAGTCTGAGGAGCACAATGACAAAGAACATTCTT
CTGACAAAGGAAGAGAGCGATTAAATTCATCTGAGAATGGTGAGGACAGACATAAACGCAAAGAAAGGAA
GTCATCACGGGGCAGAAGTCACTCAAGGTCTAGATCGCGTGAAAGGCGCCATCGCAGTAGAAGCAGGGAA
AGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGAAAAAGTCTCGATCCAGAAGCAGAGACAGGAAGAAGT
CAAGATCTAGAAGCAGGGATAGGAAACGAAGGATCAGAACTCGTTCCCGATCCAGATCCAGACACAGGCA
TAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGAAGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGA
AGATTTAGCAGAAGCCTAAGCCGGACACCTAGTCCACCTCCCTTCAGAGGCAGAAACACAGCAATGGACG
CTCAAGAAGCACTAGCTAGGAGATTAGAAAGGGCAAAGAAATTACAAGAACAACGAGAAAAGGAAATGGT
TGAAAAGCAGAAACAACAAGAAATGGCTGCAGCAGCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCT
GCACTGTTGGCATCAGGAACGCAGGTTACTCCTCAGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAG
CTAAAGCCTTGGCAGAGACTGGCATAGCAGTGCCCAGCTACTACAACCCAGCAGCTGTGAATCCAATGAA
GTTTGCTGAGCAAGAGAAAAAGAGGAAAATGCTCTGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCT
GCTGAAATCTGGGAAAAATTAAATTTTGGAAACAAGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCA
TTAAGAGTGAAGATGAAGCTGGCTGTAGCTCCGTTGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGA
AGAAGTTTTTCGCAATCTTGATGCTCAGTATGAAATGGCAAGATCACAAACCCACACACAAAGAGGAATG
GGTTTGGGTTTCACATCTTCAATGCGTGGAATGGATACAGTTTGA

Translation (434 aa):
MAAIDTERDGLALEKTSPDREKKKEQSDISISPRASKHHYSRSRSRSRERKRKSDDGRKHRSRSRSKEGR
RHESKDKSSKRHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRE
RKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSRSRDRKKRIEKPR
RFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAAAAATGGSVLNVA
ALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQS
AEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARSQTHTQRGM
GLGFTSSMRGMDTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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