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Report for CCDS39133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39133.1 Public Mus musculus 5 Csn1s2b 23 108 98 CCDS HistoryNCBI Gene:12992Re-query CCDS DB by CCDS ID:39133.1Re-query CCDS DB by GeneID:12992See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072539.11 ENSMUSP00000072352.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072539.11Link to Ensembl Protein Viewer:ENSMUSP00000072352.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072539Re-query CCDS DB by Protein ID:ENSMUSP00000072352
Original member Current member NCBI NM_009973.3 NP_034103.2 Accepted alive Link to Nucleotide Sequence:NM_009973.3Link to Protein Sequence:NP_034103.2Re-query CCDS DB by Nucleotide ID:NM_009973Re-query CCDS DB by Protein ID:NP_034103Link to BLAST:NP_034103.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034103.2 143 P02664 143 100% 0 0

Chromosomal Locations for CCDS 39133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87809909 87809959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813088 87813114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813838 87813861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813941 87813982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87815094 87815126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87816641 87816664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87818943 87818966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87819066 87819110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87820951 87820995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87822212 87822322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87824139 87824144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGAAGTTCATCATTCTTACTTGCCTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGCAATACATCT
CCAGTGAGGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAGAATATGGATGTGGCCTTTTTTCCCAG
TCAGGAAACTGTAGAGAACATTTACATTCCCCAAATGGAATCTGTTGAAGCTCCCATGAAGGTATCTGAC
ATCATTTCTCAGCAACAATACAACCAGAAAATGATGGACATGAGTGTGAGTGCCAGAGAGAAAACTGTGA
TGACTGAAGAAAGTAAGAACATCCAAGACTACATGAACAAAATGAAACGATACAGCAAGATCACCTGGCC
ACAGTTTGTAAAGCTTCTCCATCAATACCAGAAAACCATGACCCCGTGGAGCTATTACCCATCTACCCCC
AGCCAGGTTTGA

Translation (143 aa):
MKFIILTCLLAVALAKQRMEQYISSEESMDNSQENFKQNMDVAFFPSQETVENIYIPQMESVEAPMKVSD
IISQQQYNQKMMDMSVSAREKTVMTEESKNIQDYMNKMKRYSKITWPQFVKLLHQYQKTMTPWSYYPSTP
SQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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