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Report for CCDS39114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39114.1 Public Mus musculus 5 Kdr 23 108 98 CCDS HistoryNCBI Gene:16542Re-query CCDS DB by CCDS ID:39114.1Re-query CCDS DB by GeneID:16542See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113516.1 ENSMUSP00000109144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113516.1Link to Ensembl Protein Viewer:ENSMUSP00000109144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113516Re-query CCDS DB by Protein ID:ENSMUSP00000109144
Original member Current member NCBI NM_010612.3 NP_034742.2 Accepted alive Link to Nucleotide Sequence:NM_010612.3Link to Protein Sequence:NP_034742.2Re-query CCDS DB by Nucleotide ID:NM_010612Re-query CCDS DB by Protein ID:NP_034742Link to BLAST:NP_034742.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034742.2 1345 P35918-1 1345 100% 0 0

Chromosomal Locations for CCDS 39114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75934423 75934618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75936295 75936380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75936839 75936938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75941810 75941961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75943435 75943540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75943925 75944024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75944271 75944382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75944523 75944645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75946819 75946916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75948751 75948904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75949515 75949603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75950109 75950222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75951814 75951918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75952272 75952407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75952840 75952946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75956154 75956285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75956964 75957110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75959117 75959458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75960710 75960818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75961734 75961845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75962710 75962866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75964575 75964738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75964825 75964939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75966347 75966524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75967672 75967811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75968321 75968489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75968731 75968861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75972253 75972455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75974402 75974495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75978102 75978168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4038 nt):
ATGGAGAGCAAGGCGCTGCTAGCTGTCGCTCTGTGGTTCTGCGTGGAGACCCGAGCCGCCTCTGTGGGTT
TGCCTGGCGATTTTCTCCATCCCCCCAAGCTCAGCACACAGAAAGACATACTGACAATTTTGGCAAATAC
AACCCTTCAGATTACTTGCAGGGGACAGCGGGACCTGGACTGGCTTTGGCCCAATGCTCAGCGTGATTCT
GAGGAAAGGGTATTGGTGACTGAATGCGGCGGTGGTGACAGTATCTTCTGCAAAACACTCACCATTCCCA
GGGTGGTTGGAAATGATACTGGAGCCTACAAGTGCTCGTACCGGGACGTCGACATAGCCTCCACTGTTTA
TGTCTATGTTCGAGATTACAGATCACCATTCATCGCCTCTGTCAGTGACCAGCATGGCATCGTGTACATC
ACCGAGAACAAGAACAAAACTGTGGTGATCCCCTGCCGAGGGTCGATTTCAAACCTCAATGTGTCTCTTT
GCGCTAGGTATCCAGAAAAGAGATTTGTTCCGGATGGAAACAGAATTTCCTGGGACAGCGAGATAGGCTT
TACTCTCCCCAGTTACATGATCAGCTATGCCGGCATGGTCTTCTGTGAGGCAAAGATCAATGATGAAACC
TATCAGTCTATCATGTACATAGTTGTGGTTGTAGGATATAGGATTTATGATGTGATTCTGAGCCCCCCGC
ATGAAATTGAGCTATCTGCCGGAGAAAAACTTGTCTTAAATTGTACAGCGAGAACAGAGCTCAATGTGGG
GCTTGATTTCACCTGGCACTCTCCACCTTCAAAGTCTCATCATAAGAAGATTGTAAACCGGGATGTGAAA
CCCTTTCCTGGGACTGTGGCGAAGATGTTTTTGAGCACCTTGACAATAGAAAGTGTGACCAAGAGTGACC
AAGGGGAATACACCTGTGTAGCGTCCAGTGGACGGATGATCAAGAGAAATAGAACATTTGTCCGAGTTCA
CACAAAGCCTTTTATTGCTTTCGGTAGTGGGATGAAATCTTTGGTGGAAGCCACAGTGGGCAGTCAAGTC
CGAATCCCTGTGAAGTATCTCAGTTACCCAGCTCCTGATATCAAATGGTACAGAAATGGAAGGCCCATTG
AGTCCAACTACACAATGATTGTTGGCGATGAACTCACCATCATGGAAGTGACTGAAAGAGATGCAGGAAA
CTACACGGTCATCCTCACCAACCCCATTTCAATGGAGAAACAGAGCCACATGGTCTCTCTGGTTGTGAAT
GTCCCACCCCAGATCGGTGAGAAAGCCTTGATCTCGCCTATGGATTCCTACCAGTATGGGACCATGCAGA
CATTGACATGCACAGTCTACGCCAACCCTCCCCTGCACCACATCCAGTGGTACTGGCAGCTAGAAGAAGC
CTGCTCCTACAGACCCGGCCAAACAAGCCCGTATGCTTGTAAAGAATGGAGACACGTGGAGGATTTCCAG
GGGGGAAACAAGATCGAAGTCACCAAAAACCAATATGCCCTGATTGAAGGAAAAAACAAAACTGTAAGTA
CGCTGGTCATCCAAGCTGCCAACGTGTCAGCGTTGTACAAATGTGAAGCCATCAACAAAGCGGGACGAGG
AGAGAGGGTCATCTCCTTCCATGTGATCAGGGGTCCTGAAATTACTGTGCAACCTGCTGCCCAGCCAACT
GAGCAGGAGAGTGTGTCCCTGTTGTGCACTGCAGACAGAAATACGTTTGAGAACCTCACGTGGTACAAGC
TTGGCTCACAGGCAACATCGGTCCACATGGGCGAATCACTCACACCAGTTTGCAAGAACTTGGATGCTCT
TTGGAAACTGAATGGCACCATGTTTTCTAACAGCACAAATGACATCTTGATTGTGGCATTTCAGAATGCC
TCTCTGCAGGACCAAGGCGACTATGTTTGCTCTGCTCAAGATAAGAAGACCAAGAAAAGACATTGCCTGG
TCAAACAGCTCATCATCCTAGAGCGCATGGCACCCATGATCACCGGAAATCTGGAGAATCAGACAACAAC
CATTGGCGAGACCATTGAAGTGACTTGCCCAGCATCTGGAAATCCTACCCCACACATTACATGGTTCAAA
GACAACGAGACCCTGGTAGAAGATTCAGGCATTGTACTGAGAGATGGGAACCGGAACCTGACTATCCGCA
GGGTGAGGAAGGAGGATGGAGGCCTCTACACCTGCCAGGCCTGCAATGTCCTTGGCTGTGCAAGAGCGGA
GACGCTCTTCATAATAGAAGGTGCCCAGGAAAAGACCAACTTGGAAGTCATTATCCTCGTCGGCACTGCA
GTGATTGCCATGTTCTTCTGGCTCCTTCTTGTCATTGTCCTACGGACCGTTAAGCGGGCCAATGAAGGGG
AACTGAAGACAGGCTACTTGTCTATTGTCATGGATCCAGATGAATTGCCCTTGGATGAGCGCTGTGAACG
CTTGCCTTATGATGCCAGCAAGTGGGAATTCCCCAGGGACCGGCTGAAACTAGGAAAACCTCTTGGCCGC
GGTGCCTTCGGCCAAGTGATTGAGGCAGACGCTTTTGGAATTGACAAGACAGCGACTTGCAAAACAGTAG
CCGTCAAGATGTTGAAAGAAGGAGCAACACACAGCGAGCATCGAGCCCTCATGTCTGAACTCAAGATCCT
CATCCACATTGGTCACCATCTCAATGTGGTGAACCTCCTAGGCGCCTGCACCAAGCCGGGAGGGCCTCTC
ATGGTGATTGTGGAATTCTGCAAGTTTGGAAACCTATCAACTTACTTACGGGGCAAGAGAAATGAATTTG
TTCCCTATAAGAGCAAAGGGGCACGCTTCCGCCAGGGCAAGGACTACGTTGGGGAGCTCTCCGTGGATCT
GAAAAGACGCTTGGACAGCATCACCAGCAGCCAGAGCTCTGCCAGCTCAGGCTTTGTTGAGGAGAAATCG
CTCAGTGATGTAGAGGAAGAAGAAGCTTCTGAAGAACTGTACAAGGACTTCCTGACCTTGGAGCATCTCA
TCTGTTACAGCTTCCAAGTGGCTAAGGGCATGGAGTTCTTGGCATCAAGGAAGTGTATCCACAGGGACCT
GGCAGCACGAAACATTCTCCTATCGGAGAAGAATGTGGTTAAGATCTGTGACTTCGGCTTGGCCCGGGAC
ATTTATAAAGACCCGGATTATGTCAGAAAAGGAGATGCCCGACTCCCTTTGAAGTGGATGGCCCCGGAAA
CCATTTTTGACAGAGTATACACAATTCAGAGCGATGTGTGGTCTTTCGGTGTGTTGCTCTGGGAAATATT
TTCCTTAGGTGCCTCCCCATACCCTGGGGTCAAGATTGATGAAGAATTTTGTAGGAGATTGAAAGAAGGA
ACTAGAATGCGGGCTCCTGACTACACTACCCCAGAAATGTACCAGACCATGCTGGACTGCTGGCATGAGG
ACCCCAACCAGAGACCCTCGTTTTCAGAGTTGGTGGAGCATTTGGGAAACCTCCTGCAAGCAAATGCGCA
GCAGGATGGCAAAGACTATATTGTTCTTCCAATGTCAGAGACACTGAGCATGGAAGAGGATTCTGGACTC
TCCCTGCCTACCTCACCTGTTTCCTGTATGGAGGAAGAGGAAGTGTGCGACCCCAAATTCCATTATGACA
ACACAGCAGGAATCAGTCATTATCTCCAGAACAGTAAGCGAAAGAGCCGGCCAGTGAGTGTAAAAACATT
TGAAGATATCCCATTGGAGGAACCAGAAGTAAAAGTGATCCCAGATGACAGCCAGACAGACAGTGGGATG
GTCCTTGCATCAGAAGAGCTGAAAACTCTGGAAGACAGGAACAAATTATCTCCATCTTTTGGTGGAATGA
TGCCCAGTAAAAGCAGGGAGTCTGTGGCCTCGGAAGGCTCCAACCAGACCAGTGGCTACCAGTCTGGGTA
TCACTCAGATGACACAGACACCACCGTGTACTCCAGCGACGAGGCAGGACTTTTAAAGATGGTGGATGCT
GCAGTTCACGCTGACTCAGGGACCACACTGCGCTCACCTCCTGTTTAA

Translation (1345 aa):
MESKALLAVALWFCVETRAASVGLPGDFLHPPKLSTQKDILTILANTTLQITCRGQRDLDWLWPNAQRDS
EERVLVTECGGGDSIFCKTLTIPRVVGNDTGAYKCSYRDVDIASTVYVYVRDYRSPFIASVSDQHGIVYI
TENKNKTVVIPCRGSISNLNVSLCARYPEKRFVPDGNRISWDSEIGFTLPSYMISYAGMVFCEAKINDET
YQSIMYIVVVVGYRIYDVILSPPHEIELSAGEKLVLNCTARTELNVGLDFTWHSPPSKSHHKKIVNRDVK
PFPGTVAKMFLSTLTIESVTKSDQGEYTCVASSGRMIKRNRTFVRVHTKPFIAFGSGMKSLVEATVGSQV
RIPVKYLSYPAPDIKWYRNGRPIESNYTMIVGDELTIMEVTERDAGNYTVILTNPISMEKQSHMVSLVVN
VPPQIGEKALISPMDSYQYGTMQTLTCTVYANPPLHHIQWYWQLEEACSYRPGQTSPYACKEWRHVEDFQ
GGNKIEVTKNQYALIEGKNKTVSTLVIQAANVSALYKCEAINKAGRGERVISFHVIRGPEITVQPAAQPT
EQESVSLLCTADRNTFENLTWYKLGSQATSVHMGESLTPVCKNLDALWKLNGTMFSNSTNDILIVAFQNA
SLQDQGDYVCSAQDKKTKKRHCLVKQLIILERMAPMITGNLENQTTTIGETIEVTCPASGNPTPHITWFK
DNETLVEDSGIVLRDGNRNLTIRRVRKEDGGLYTCQACNVLGCARAETLFIIEGAQEKTNLEVIILVGTA
VIAMFFWLLLVIVLRTVKRANEGELKTGYLSIVMDPDELPLDERCERLPYDASKWEFPRDRLKLGKPLGR
GAFGQVIEADAFGIDKTATCKTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL
MVIVEFCKFGNLSTYLRGKRNEFVPYKSKGARFRQGKDYVGELSVDLKRRLDSITSSQSSASSGFVEEKS
LSDVEEEEASEELYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARD
IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEG
TRMRAPDYTTPEMYQTMLDCWHEDPNQRPSFSELVEHLGNLLQANAQQDGKDYIVLPMSETLSMEEDSGL
SLPTSPVSCMEEEEVCDPKFHYDNTAGISHYLQNSKRKSRPVSVKTFEDIPLEEPEVKVIPDDSQTDSGM
VLASEELKTLEDRNKLSPSFGGMMPSKSRESVASEGSNQTSGYQSGYHSDDTDTTVYSSDEAGLLKMVDA
AVHADSGTTLRSPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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