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Report for CCDS3905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3905.1 Public Homo sapiens 5 RAD1 24 110 108 CCDS HistoryNCBI Gene:5810Re-query CCDS DB by CCDS ID:3905.1Re-query CCDS DB by GeneID:5810See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341754.8 ENSP00000340879.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341754.8Link to Ensembl Protein Viewer:ENSP00000340879.4Re-query CCDS DB by Nucleotide ID:ENST00000341754Re-query CCDS DB by Protein ID:ENSP00000340879
Original member Current member EBI ENST00000382038.7 ENSP00000371469.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382038.7Link to Ensembl Protein Viewer:ENSP00000371469.2Re-query CCDS DB by Nucleotide ID:ENST00000382038Re-query CCDS DB by Protein ID:ENSP00000371469
Original member Current member NCBI NM_002853.4 NP_002844.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002853.4Link to Protein Sequence:NP_002844.1Re-query CCDS DB by Nucleotide ID:NM_002853Re-query CCDS DB by Protein ID:NP_002844Link to BLAST:NP_002844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002844.1 282 O60671-1 282 100% 0 0

Chromosomal Locations for CCDS 3905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34908765 34908948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34909258 34909356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34911554 34911812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34913470 34913578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34914695 34914892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCCCCTTCTGACCCAACAGATCCAAGACGAGGATGATCAGTACAGCCTTGTGGCCAGCCTTGACAACG
TTAGGAATCTCTCCACTATCTTGAAAGCTATTCATTTCCGAGAACATGCCACGTGTTTCGCAACTAAAAA
TGGTATCAAAGTAACAGTGGAAAATGCAAAGTGTGTGCAAGCAAATGCTTTTATTCAGGCTGGAATATTT
CAGGAGTTTAAAGTTCAGGAAGAGTCTGTTACTTTTCGAATTAATTTAACTGTCCTTTTAGACTGTTTAT
CTATTTTTGGATCAAGTCCTATGCCAGGGACTTTAACTGCACTTCGAATGTGTTACCAAGGTTATGGTTA
CCCTTTGATGCTGTTCCTGGAAGAAGGAGGAGTGGTGACAGTCTGCAAAATCAATACACAGGAACCTGAG
GAGACCCTGGACTTTGATTTCTGCAGCACCAATGTTATTAATAAAATTATTCTGCAGTCAGAGGGGCTCC
GTGAAGCATTTTCTGAATTGGATATGACGAGTGAAGTCCTACAAATTACCATGTCTCCTGACAAGCCTTA
TTTCAGGTTATCTACTTTTGGAAATGCAGGAAGTTCCCACCTTGACTATCCCAAAGATTCTGATTTGATG
GAAGCATTTCATTGTAATCAGACCCAAGTCAACAGATACAAGATTTCCTTACTGAAACCCTCTACAAAGG
CATTAGTCCTATCTTGTAAGGTATCTATTCGGACAGATAACAGAGGCTTCCTTTCATTACAGTATATGAT
TAGAAATGAAGATGGACAAATATGTTTTGTGGAATATTACTGCTGCCCTGATGAAGAAGTTCCTGAATCT
GAGTCTTGA

Translation (282 aa):
MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIF
QEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPE
ETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLM
EAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPES
ES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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