NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38969.1 Public Mus musculus 4 Tardbp 23 108 98 CCDS HistoryNCBI Gene:230908Re-query CCDS DB by CCDS ID:38969.1Re-query CCDS DB by GeneID:230908See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045180.13 ENSMUSP00000038113.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045180.13Link to Ensembl Protein Viewer:ENSMUSP00000038113.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045180Re-query CCDS DB by Protein ID:ENSMUSP00000038113
Original member Current member EBI ENSMUST00000165113.7 ENSMUSP00000129342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165113.7Link to Ensembl Protein Viewer:ENSMUSP00000129342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165113Re-query CCDS DB by Protein ID:ENSMUSP00000129342
Original member Current member EBI ENSMUST00000188134.6 ENSMUSP00000139476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188134.6Link to Ensembl Protein Viewer:ENSMUSP00000139476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188134Re-query CCDS DB by Protein ID:ENSMUSP00000139476
Original member Current member EBI ENSMUST00000189048.6 ENSMUSP00000140364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189048.6Link to Ensembl Protein Viewer:ENSMUSP00000140364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189048Re-query CCDS DB by Protein ID:ENSMUSP00000140364
Original member Current member NCBI NM_001003898.3 NP_001003898.1 Accepted alive Link to Nucleotide Sequence:NM_001003898.3Link to Protein Sequence:NP_001003898.1Re-query CCDS DB by Nucleotide ID:NM_001003898Re-query CCDS DB by Protein ID:NP_001003898Link to BLAST:NP_001003898.1

Chromosomal Locations for CCDS 38969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148617650 148617705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148618665 148618791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148619184 148619354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148620592 148620732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148621949 148622112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148625125 148625362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTCTGAATATATTCGGGTAACAGAAGATGAGAACGATGAACCCATTGAAATACCATCAGAAGACGATG
GGACGGTGTTGCTGTCCACAGTTACAGCCCAGTTTCCAGGGGCATGCGGCCTGCGCTACCGGAATCCCGT
GTCTCAGTGTATGAGAGGAGTCCGACTGGTGGAAGGAATTCTGCATGCCCCAGATGCTGGCTGGGGCAAT
CTGGTATATGTTGTCAACTATCCCAAAGATAACAAAAGGAAAATGGATGAGACAGATGCTTCCTCTGCAG
TGAAAGTGAAAAGAGCAGTCCAGAAAACATCTGACCTCATAGTGTTGGGTCTCCCCTGGAAAACAACTGA
GCAGGATCTGAAAGACTATTTCAGTACTTTTGGAGAGGTTCTTATGGTTCAGGTCAAGAAAGATCTTAAA
ACTGGTCACTCGAAAGGGTTTGGCTTTGTTCGATTTACAGAATATGAAACCCAAGTGAAAGTAATGTCAC
AACGACATATGATAGATGGGCGATGGTGTGACTGTAAACTTCCCAACTCTAAGCAAAGCCCAGACGAGCC
TTTGAGAAGCAGAAAGGTGTTTGTTGGACGTTGTACAGAGGACATGACTGCTGAAGAGCTTCAGCAGTTT
TTCTGTCAGTATGGAGAAGTGGTAGATGTCTTCATTCCCAAACCATTCAGAGCTTTTGCCTTCGTCACCT
TTGCAGATGATAAGGTTGCCCAGTCTCTTTGTGGAGAGGATTTGATCATTAAAGGAATCAGCGTGCATAT
ATCCAATGCTGAACCTAAGCATAATAGCAATAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCA
GTTCATCTCATTTCAAATGTTTATGGAAGAAGCACTTCATTGAAAGTAGTGCTGTAA

Translation (298 aa):
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGN
LVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLK
TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQF
FCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNP
VHLISNVYGRSTSLKVVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH