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Report for CCDS38912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38912.1 Public Mus musculus 4 Cnksr1 23 108 98 CCDS HistoryNCBI Gene:194231Re-query CCDS DB by CCDS ID:38912.1Re-query CCDS DB by GeneID:194231See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030645.8 ENSMUSP00000030645.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030645.8Link to Ensembl Protein Viewer:ENSMUSP00000030645.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030645Re-query CCDS DB by Protein ID:ENSMUSP00000030645
Original member Current member NCBI NM_001081047.1 NP_001074516.1 Accepted alive Link to Nucleotide Sequence:NM_001081047.1Link to Protein Sequence:NP_001074516.1Re-query CCDS DB by Nucleotide ID:NM_001081047Re-query CCDS DB by Protein ID:NP_001074516Link to BLAST:NP_001074516.1

Chromosomal Locations for CCDS 38912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134228315 134228584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134228939 134229120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134229206 134229290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134229382 134229443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134229586 134229662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134230180 134230251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134230412 134230485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134232041 134232213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134232638 134232668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134232747 134232853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134232994 134233052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134233140 134233201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134233286 134233387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134233702 134233764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134233868 134233927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134234489 134234593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134234670 134234711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134235109 134235193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134235871 134236052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134236160 134236317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134238257 134238308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGAGCCCGTGGAGGCCTGGACCCCCGGGAAGGTGGCAGCTTGGCTGAGAGGCCTTGATGATGCCCTAC
AGGACTATCCCTTCGAGGACTGGCAGCTGCCTGGGAAGTACCTGCTGCAGCTCTGTCCCCAAAGCCTCGA
GGCTCTGACTGTGTGGCCTTTGGGCCACCAGGAACTCATTCTAGATGGGGTGGAACAGCTCCGGGCCCTG
GGCTCTAATCTACAGACAGAGAACCTGCAGAGCCTGGCTCAGGGGCTGCTGGAAAGGACCCAGGCCTTCC
AAAGCTTGGTCCAAGGCTCTCTGGGCAACTGTGCTGAGACACCGGCTGACGTCCTCAAGGCTGCGGTGGA
GCTGGTGCGGGAAGCCCATGCCCTCCTCTCTTGGCTCAACGGGTACCTCTTCTCTCACTTAAATGACTTC
TCTGCCTGCCAGGAGATTGGCGTGCTGTGCGGGGAGCTGGGCCAAGTCCTGCAGGAGGACTGCCCAGAGG
CTGAGAAGGAACGAAACATCCTAAGGATTTGCAGCCACGTGGCTGGGATCTGTCACAACATCCTGAGCTG
CAGCCCAGAGGAGCTGCTGGAACAGAAGGCCGTGCTGGAGTCGGTGCAGGTGGACGACCCTTCCGGTCTA
GAAATTCACACCACCAGCAACTGCCTGCACTTTGTGTCCCGAGTAGGGGTTCAGGCTGCCACCAGCTCCC
AGATCCTGCCAGGAGACGAGATTGTCCAGGTCAATGAGCAGGTGGTGGTGGGCTGGTCCCATAAGAACAT
GCTGAGGGAGCTGCTGAGGGAACCAGCAAAGGTCAGCCTGGTACTGAAGAAGATTCCCGTGCCAGAGACC
CCCTCACAGACGTCCCTGGACTCTCCTCACCTGCTAAGCCAATCGCTGCCCCTGAACCCACCGTCTCCCA
GGGTTCCGTCTGAAGGTCTTTTAGCAGATGGAACTCCTGGACCCAGCCCTGCTTGGACAGACTCTACCTC
CTTTGACGCTCAGTCCCCGCCCACTCCCCCTGGACCACCAGGCGTACTTCCAGAAGAAACAGCAGAACCT
CTGGAGTCTTCGGGACACCCTGACAAGAGTCCCATCCTTGGTCGGAAGAAATCTAAAGGTATAGCCACGA
GGCTGAGCCGCCGCCGGGTGTCCTGCCGAGAGTTGGGTCTGCCGGATTGTGATGGATGGCTTCTACTGCG
GAAGGTACCCGGTGGCTTTATGGGCCCACGCTGGCGCCGCTGCTGGTTTGTGCTCAAGGGACACACCCTA
TACTGGTACCGCCAACCCCAGGATGAAAAGGCCGAAGGGCTTATCAATCTCTCCAACTACAGCCTAGAGA
GTGGACATGACCAGAAGAAAAAATATGTGTTCCAGCTGACCCATGATGTGTACAAGCCCTTCATCTTTGC
TGCCGAGACCCTGTCTGATCTGAGCAAGTGGGTGCGACATCTCATTACCTGCATTTCCAAGTACCAGGCT
CAAGGCCGGGCCCCCTCCTCTGCCAGAGAGGAAGACTGCTACAGTGAGACAGAAGCAGAAGACCCCGATG
AGGAGGCTGGGTCCCGCTCCGCTTCTCCTGGCCCAGCTCAAGCGTGGAGTGACACATCACCCGTGGCTTC
ACCCCTGCAGAGTCCGAGAACTTCCTTTAACTCTTCACCAGACAGCAGTGACAGAGCCCTGGAAGGAATG
GTACAGGGGCTGAGGCAGGGAGGGGTGTCCCTCCTGGGCCAGCCCCAGCCCCTGACCCATGAACAATGGC
GGAGTTCTTTCATGAGGCGCAACCGTGACCCTCATCTCAATGAGCGTGCACACCGTATCCGGGCACTCCA
GAGCACCCTCAAGGCAAAGCTGCAGGAACTGCAGGCCCTGGAGGAAGTGCTGGGTGATCCTGAACTCACA
AGTGCAAAGTTCCGACAGTGGAAGGAACAGAACCAGGAGCTATACTCAGAGGGCCTGAGAACCTGGGGAG
GGACGTGGGCCCAGACCAGCTCCTCAGACCCAAACTCTGACTCCAGGGCTCATTCCCCACAGCCCCTCCC
CTTTGACCCTGAAGAGCCCTCCCAGCTTTTTCCCTTAACCCCAGAGAACAGCCGCCAACCTCCTGACCTC
TGA

Translation (700 aa):
MEPVEAWTPGKVAAWLRGLDDALQDYPFEDWQLPGKYLLQLCPQSLEALTVWPLGHQELILDGVEQLRAL
GSNLQTENLQSLAQGLLERTQAFQSLVQGSLGNCAETPADVLKAAVELVREAHALLSWLNGYLFSHLNDF
SACQEIGVLCGELGQVLQEDCPEAEKERNILRICSHVAGICHNILSCSPEELLEQKAVLESVQVDDPSGL
EIHTTSNCLHFVSRVGVQAATSSQILPGDEIVQVNEQVVVGWSHKNMLRELLREPAKVSLVLKKIPVPET
PSQTSLDSPHLLSQSLPLNPPSPRVPSEGLLADGTPGPSPAWTDSTSFDAQSPPTPPGPPGVLPEETAEP
LESSGHPDKSPILGRKKSKGIATRLSRRRVSCRELGLPDCDGWLLLRKVPGGFMGPRWRRCWFVLKGHTL
YWYRQPQDEKAEGLINLSNYSLESGHDQKKKYVFQLTHDVYKPFIFAAETLSDLSKWVRHLITCISKYQA
QGRAPSSAREEDCYSETEAEDPDEEAGSRSASPGPAQAWSDTSPVASPLQSPRTSFNSSPDSSDRALEGM
VQGLRQGGVSLLGQPQPLTHEQWRSSFMRRNRDPHLNERAHRIRALQSTLKAKLQELQALEEVLGDPELT
SAKFRQWKEQNQELYSEGLRTWGGTWAQTSSSDPNSDSRAHSPQPLPFDPEEPSQLFPLTPENSRQPPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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