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Report for CCDS38860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38860.1 Public Mus musculus 4 P3h1 23 108 98 CCDS HistoryNCBI Gene:56401Re-query CCDS DB by CCDS ID:38860.1Re-query CCDS DB by GeneID:56401See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081606.6 ENSMUSP00000080312.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081606.6Link to Ensembl Protein Viewer:ENSMUSP00000080312.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081606Re-query CCDS DB by Protein ID:ENSMUSP00000080312
Original member Current member NCBI NM_001042411.1 NP_001035874.1 Accepted alive Link to Nucleotide Sequence:NM_001042411.1Link to Protein Sequence:NP_001035874.1Re-query CCDS DB by Nucleotide ID:NM_001042411Re-query CCDS DB by Protein ID:NP_001035874Link to BLAST:NP_001035874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035874.1 560 Q3V1T4-3 560 100% 0 0

Chromosomal Locations for CCDS 38860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119235309 119235398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119236777 119236966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119237865 119237996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119238646 119238785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241117 119241206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241482 119241534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241683 119241804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244022 119244149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244385 119244480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244957 119245107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119246635 119246752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247131 119247206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247445 119247585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247891 119248046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGAGATGCGGCAGAACCTCGACTATTACCAAACCATGTCTGGGGTGAAGGAGGCAGACTTCAGGGATC
TCGAGGCCAAGCCCCATATGCATGAGTTTCGGCTGGGGGTACGACTCTACTCAGAGGAGAAGCCACAGGA
AGCTGTGCCCCACCTGGAGGCGGCACTGCAAGAGTACTTTGTGGCCGATGAGGAATGCCGTGCCCTCTGC
GAAGGGCCCTATGACTACGACGGCTACAACTACCTAGACTACAGCGCTGACCTCTTCCAGGCCATCACAG
ATCATTACGTCCAGGTCCTCAACTGTAAGCAGAACTGTGTCACGGAGCTGGCTTCCCACCCAAGTAGGGA
AAAGCCCTTTGAAGACTTCCTCCCTTCACACTATAATTACCTACAGTTTGCCTACTACAACATTGGGAAC
TATACACAAGCTATTGAATGTGCCAAGACCTACCTCCTCTTCTTTCCCAATGATGAGGTGATGCACCAGA
ATCTGGCTTATTACACAGCCATGCTTGGAGAAGAAGAGGCCAGCTCCATCAGCCCCAGGGAGAATGCCGA
GGAATACCGACGTCGAAGCCTGTTGGAGAAAGAACTGCTTTTCTTCGCTTATGACATTTTTGGAATTCCC
TTTGTGGATCCGGACTCATGGACTCCAGAAGAGGTGATTCCCAAGAGACTGCAGGAGAAACAGAAGTCGG
AACGCGAAACCGCAGTCCGCATCTCCCAGGAGATTGGCAACCTTATGAAGGAGATCGAGACCCTCGTGGA
GGAGAAGACCAAGGAGTCCTTGGATGTGAGCCGACTGACGCGGGAAGGTGGTCCCCTGCTGTATGAAGGC
ATCAGTCTCACCATGAATTCCAAAGTCTTGAATGGCTCCCAGCGGGTGGTGATGGATGGTGTGATCTCTG
ATGATGAGTGCCAGGAGCTGCAGAGACTGACCAATGCGGCAGCAACTTCGGGAGATGGCTACCGAGGTCA
GACCTCCCCACACACCCCAAATGAAAAGTTCTATGGTGTTACTGTCCTCAAAGCTCTCAAGCTCGGGCAG
GAAGGAAAAGTTCCTCTGCAGAGTGCCCGCATGTACTACAACGTGACAGAGAAGGTGCGGCGCGTCATGG
AGTCCTACTTCCGCCTGGACACGCCCCTCTATTTCTCTTATTCCCACCTCGTGTGCCGCACTGCAATAGA
AGAGTCACAGGCTGAGAGGAAGGACAGTAGCCACCCCGTCCACGTGGATAACTGCATCCTGAATGCCGAA
GCCCTCATGTGTATCAAGGAGCCCCCAGCCTACACGTTCCGGGACTACAGCGCCATCCTTTACCTCAATG
GCGACTTCGATGGAGGAAACTTTTACTTCACAGAACTAGATGCCAAGACTGTGACGGCAGAGGTGCAGCC
CCAGTGTGGAAGGGCTGTGGGATTCTCTTCTGGCACTGAGAACCCACATGGAGTGAAGGCTGTCACCAGG
GGGCAGCGCTGCGCCATCGCCCTGTGGTTCACGCTGGATCCTCGGCACAGTGAGAGAGACAGGGTGCAGG
CAGATGACCTGGTGAAGATGCTGTTCAGCCCAGAAGAGGTGGACCTCCCCCAGGAACAGCCCCTGCCTGA
CCAGCAGGGCTCGCCAGAGCCTGGAGAAGAGTCTCTGTCAGACAGAGGGTCGCTGCACAAGGATGAGCTA
TGA

Translation (560 aa):
MEMRQNLDYYQTMSGVKEADFRDLEAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEYFVADEECRALC
EGPYDYDGYNYLDYSADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIGN
YTQAIECAKTYLLFFPNDEVMHQNLAYYTAMLGEEEASSISPRENAEEYRRRSLLEKELLFFAYDIFGIP
FVDPDSWTPEEVIPKRLQEKQKSERETAVRISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEG
ISLTMNSKVLNGSQRVVMDGVISDDECQELQRLTNAAATSGDGYRGQTSPHTPNEKFYGVTVLKALKLGQ
EGKVPLQSARMYYNVTEKVRRVMESYFRLDTPLYFSYSHLVCRTAIEESQAERKDSSHPVHVDNCILNAE
ALMCIKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTR
GQRCAIALWFTLDPRHSERDRVQADDLVKMLFSPEEVDLPQEQPLPDQQGSPEPGEESLSDRGSLHKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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