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Report for CCDS38828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38828.1 Public Mus musculus 4 Pars2 23 108 98 CCDS HistoryNCBI Gene:230577Re-query CCDS DB by CCDS ID:38828.1Re-query CCDS DB by GeneID:230577See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106781.1 ENSMUSP00000102393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106781.1Link to Ensembl Protein Viewer:ENSMUSP00000102393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106781Re-query CCDS DB by Protein ID:ENSMUSP00000102393
Original member Current member NCBI NM_001083887.2 NP_001077356.1 Accepted alive Link to Nucleotide Sequence:NM_001083887.2Link to Protein Sequence:NP_001077356.1Re-query CCDS DB by Nucleotide ID:NM_001083887Re-query CCDS DB by Protein ID:NP_001077356Link to BLAST:NP_001077356.1
Original member Current member NCBI NM_001285783.1 NP_001272712.1 Accepted alive Link to Nucleotide Sequence:NM_001285783.1Link to Protein Sequence:NP_001272712.1Re-query CCDS DB by Nucleotide ID:NM_001285783Re-query CCDS DB by Protein ID:NP_001272712Link to BLAST:NP_001272712.1

Chromosomal Locations for CCDS 38828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106653023 106654558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGTGCTGGGCTAATAGACATGGAAGGATCCACATCTTGGATCCCGTGCTGAGAACCAAGTTAATCGTCA
TC
CCACGTGACTCATTTTTCTCCAGGTGCCAGGGTGTCATGGAAGGTCTGCTGACAAGATGCAGAACACT
G
TCTGCCTTGGCTGCCTGCAGCCTCCGTCACTGCAGATACATCATCCACAAGTGTTACCATCGTGCGCCC
GGG
AGAGGGCAGCGCTTGGTATTATCCCGCATGTTCCAGCCTCAGAACCTTCGGGAAGACCAGGTGCTTT
CT
CTGGAGGGCAGAGCTAGCGACCTGACCTGTAAGAGCCAGCGGCTGATGCTGCAAGTGGGCCTGATCCT
T
CCAGCCAGCCCTGGCTGTTACCACCTCATGCCCTATACAGTGCGTGCCGTGGAGAAGCTTGTGCGGGTG
ATA
GACCAGGAGATGCAGGCCATCGGCGGGCAGAAAATCAACATGCCCAGCCTCAGCCCAGCTGAGCTGT
GG
CGGGCCACCAGCCGCTGGGACCTGATGGGCAGGGAGCTGCTGAGACTGAGAGACAGGCACGGCAAAGA
G
TACTGCTTGGGACCGACTCATGAGGAAGCGGTTACAGCCCTGGTTGCCTCCCAGAAGAAACTTTCCTAC
AAG
CAGCTCCCCTTGTTGTTGTACCAGGTTACAAGGAAGTTTCGGGATGAGCCCAGGCCCCGGTTTGGTC
TT
CTCCGTGGCCGGGAGTTCTATATGAAGGACATGTACACCTTTGATTCCTCCTCTGAGGCTGCCCAGGA
A
ACCTACGGCCTGGTGTGTGATGCTTACTGTAGGCTGTTTGACAGGCTGGGATTGCAATGGATGAAGGCC
AGG
GCAGATGTGGGCAGCATCGGGGGCACGATGTCCCATGAATTCCAGCTACCAGTGGACATTGGAGAGG
AC
CGCCTTGTGGTCTGTCCCAGCTGCCACTTCTCCGCCAACACAGAGATACTAGACTTGTCACAAAAAAT
C
TGCCCTGACTGCCAGGGTCCACTGACAGAAACCAAAGGCATTGAGGTGGGGCACACATTCTACCTTAGT
ACC
AAGTACTCTTCCATTTTCAATGCCCTCTTTACCAATGCCCATGGGGAATCTTTGCTGGCTGAAATGG
GG
TGCTACGGGCTGGGAGTCACTCGGATCCTGGCTGCAGCCATCGAAGTTCTCTCTACGGAAGACTGCAT
C
CGCTGGCCCCGCCTCCTTGCCCCTTACCAAGTCTGTGTCATCCCCCCTAAGAAAGGCAGCAAGGAGACA
GCA
GCCACAGAGATTGTGGAGAAGTTATATGATGACATCATGGAGGCTGTGCCCCAGCTCCGAGGGGAGG
TC
CTGCTGGACGACAGGACCCACCTGACCATTGGAAACAGACTGAAAGATGCCAACAAGCTTGGCTACCC
C
TTTGTGATCATTGCGGGCAAGAGGGCCTTGGAGGACCCAGCACACTTTGAGGTTTGGTCTCAGAACACT
GGT
GAGGTGGTCTTCCTCACCAAAGAGGGAGTCATGGAACTACTAACTGGAGTGCATGTTGTCTAG


Translation (511 aa):
MCWANRHGRIHILDPVLRTKLIVIPRDSFFSRCQGVMEGLLTRCRTLSALAACSLRHCRYIIHKCYHRAP
G
RGQRLVLSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRV
I
DQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSY
K
QLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKA
R
ADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLS
T
KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKET
A
ATEIVEKLYDDIMEAVPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIAGKRALEDPAHFEVWSQNT
G
EVVFLTKEGVMELLTGVHVV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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