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Report for CCDS38675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38675.1 Public Mus musculus 3 Ak5 23 108 98 CCDS HistoryNCBI Gene:229949Re-query CCDS DB by CCDS ID:38675.1Re-query CCDS DB by GeneID:229949See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045262.10 ENSMUSP00000042785.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045262.10Link to Ensembl Protein Viewer:ENSMUSP00000042785.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045262Re-query CCDS DB by Protein ID:ENSMUSP00000042785
Original member NCBI NM_001081277.2 NP_001074746.1 Updated not alive Link to Nucleotide Sequence:NM_001081277.2Link to Protein Sequence:NP_001074746.1Re-query CCDS DB by Nucleotide ID:NM_001081277Re-query CCDS DB by Protein ID:NP_001074746
Current member NCBI NM_001081277.3 NP_001074746.1 Accepted alive Link to Nucleotide Sequence:NM_001081277.3Link to Protein Sequence:NP_001074746.1Re-query CCDS DB by Nucleotide ID:NM_001081277Re-query CCDS DB by Protein ID:NP_001074746Link to BLAST:NP_001074746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074746.1 562 Q920P5-1 562 100% 0 0

Chromosomal Locations for CCDS 38675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152463948 152464016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152472757 152472948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152478341 152478457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152481538 152481701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152499311 152499355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152503849 152503891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152526718 152526794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152533355 152533445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152615858 152616049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152653375 152653488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152653575 152653744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152655869 152656036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152660516 152660702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152667800 152667859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGAACACCAACGACGCCAAGGAGTACCTGGCCCGGAGGGACATTCCTCAGCTTTTCGAGAGCCTGCTCA
ATGGCTTGATGTGTTCCAAGCCAGAAGACCCCATAGAGTACTTGGAAACTTGTTTACAGAAAGTCAAGGA
GCTAGGAGGCTGTGACAAGGTGAAGTGGGACACATTTGTCAGCCAGGAAAAGAAGACGTTACCGCCCCTA
AATGGAGGACAATCACGGAGATCCTTCCTCCGAAATGTCATGCCTGAAAATTCAAACTTTCCATATCGGC
GGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGGCGGA
GCTGATAGAAGAATATGAGGTTTTTGACCCGACTAGACCTCGGCCCAAAATCATTCTTGTCATAGGTGGT
CCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGCAGAGCGGTATGGATTCCAGTACATCTCAGTGG
GAGAATTATTGAGGAAGAAAATCCACAGTGCCAGCAGCAACAGAAAATGGAGTCTGATCGCCAAGATAAT
CACCAATGGGGAGCTGGCCCCACAGGAGACAACAATTACGGAGATAAAACAAAAATTGATGCAAATACCC
GATGAAGAAGGCATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGGCTCTGTCTTTTGAGGACCAGA
TCTGCACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCG
TGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAG
AATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCATCGTGACTTTTGATGCCGACCGAGATG
AAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCGAT
GGATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGAGAGATTATTGACACAGGATCAGATTAC
GATAACCAGGACGATGATCAGCTAAATGTATTTGGAGAAGACACAGAGGGAGGCTTCATGGAGGATTTGA
GGAAGTGTAAAATTATTTTCTTGATGGGTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTGAGAAGCTGGC
AGAAAAATATGGCTTCACCCATCTCTCTACTGGTGAGCTCCTGCGCCAGGAACTGACCTCAGAGTCAGAA
AGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCGGGTGTCGTTCTGGAGCTGC
TGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGACGGCTACCCCCGGGAAGT
GAAGCAAGGGGAAGAGTTTGGACGAAGGATCGGAGACCCACACTTGGTGATCTGCATGGACTGCTCAGCA
GACACCATGACTAACCGCCTTCTTCAGAGAAGCCAGAGCAGCCAGCGGGGGGAGGACGGTGCCAAGAGCA
TTGCCAAGCGCCTGGAGGCCTACCACCGAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGAAAACACA
GCTACGGAAGGTAAATGCAGAGGGAACACCAGAGCAAGTTTTTCTTCAGCTCTGCACAGCTATTGACTCT
GTTTTCTGA

Translation (562 aa):
MNTNDAKEYLARRDIPQLFESLLNGLMCSKPEDPIEYLETCLQKVKELGGCDKVKWDTFVSQEKKTLPPL
NGGQSRRSFLRNVMPENSNFPYRRYDRLPPIHQFSIESDTDLSETAELIEEYEVFDPTRPRPKIILVIGG
PGSGKGTQSLKIAERYGFQYISVGELLRKKIHSASSNRKWSLIAKIITNGELAPQETTITEIKQKLMQIP
DEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLQKRAEQQGRPDDNLKATQRRLVNFKQ
NAAPLVKYFQEKGLIVTFDADRDEDAVFHDISVAVDSKLFPNKEAPMDSSDLDPSMMFDAGEIIDTGSDY
DNQDDDQLNVFGEDTEGGFMEDLRKCKIIFLMGGPGSGKGTQCEKLAEKYGFTHLSTGELLRQELTSESE
RSKLIRDIMERGDLVPSGVVLELLKEAMVASLGNTKGFLIDGYPREVKQGEEFGRRIGDPHLVICMDCSA
DTMTNRLLQRSQSSQRGEDGAKSIAKRLEAYHRASIPVVTYYERKTQLRKVNAEGTPEQVFLQLCTAIDS
VF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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