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Report for CCDS38642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38642.1 Public Mus musculus 3 Aimp1 23 108 98 CCDS HistoryNCBI Gene:13722Re-query CCDS DB by CCDS ID:38642.1Re-query CCDS DB by GeneID:13722See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029663.10 ENSMUSP00000029663.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029663.10Link to Ensembl Protein Viewer:ENSMUSP00000029663.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029663Re-query CCDS DB by Protein ID:ENSMUSP00000029663
Original member Current member NCBI NM_007926.2 NP_031952.2 Accepted alive Link to Nucleotide Sequence:NM_007926.2Link to Protein Sequence:NP_031952.2Re-query CCDS DB by Nucleotide ID:NM_007926Re-query CCDS DB by Protein ID:NP_031952Link to BLAST:NP_031952.2

Chromosomal Locations for CCDS 38642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132660575 132660741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132667385 132667553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132671979 132672187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132673965 132674129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132674749 132674862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132677005 132677138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132683793 132683794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGTTTCTCTGCCGATTCTGGGGAAAGATGGCAACGAATGATGCTGTTCTGAAGAGGCTGGAGCAGAAGG
GTGCAGAGGCGGATCAGATCATCGAATATCTCAAGCAGCAGGTTGCTCTTCTTAAGGAGAAAGCAATTTT
GCAGGCAACAATGAGAGAAGAAAAGAAACTTCGAGTTGAAAATGCTAAACTGAAAAAAGAAATAGAAGAG
CTAAAGCAAGAGCTGATTCTGGCAGAAATTCATAACGGAGTGGAGCAAGTGCGTGTTCGATTGAGTACTC
CACTGCAGACGAACTGTACTGCTTCTGAAAGTGTGGTGCAGTCTCCATCAGTAGCAACCACCGCCTCTCC
TGCTACAAAAGAGCAGATCAAAGCGGGAGAAGAAAAGAAGGTGAAAGAGAAGACTGAAAAGAAAGGAGAG
AAAAAGGAGAAGCAGCAGTCGGCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGTCTGGATC
TTCGAATTGGTTGTATTGTTACTGCCAAGAAGCACCCTGATGCAGATTCACTGTATGTGGAGGAAGTAGA
TGTGGGAGAAGCAGCCCCGCGCACGGTCGTCAGCGGGCTGGTGAATCATGTTCCTCTAGAACAGATGCAA
AATCGTATGGTGGTTTTACTCTGTAATCTGAAGCCTGCAAAGATGCGGGGAGTTCTGTCTCAAGCCATGG
TGATGTGTGCCAGTTCACCAGAGAAAGTGGAGATTCTGGCCCCTCCCAACGGGTCCGTTCCTGGGGACAG
AATTACTTTTGATGCTTTTCCTGGAGAGCCTGACAAGGAGCTAAACCCTAAGAAGAAGATCTGGGAGCAG
ATCCAGCCTGACCTGCACACCAATGCTGAGTGTGTGGCCACATACAAAGGAGCTCCCTTTGAGGTGAAGG
GGAAGGGAGTTTGCAGAGCCCAAACCATGGCCAATAGTGGAATTAAATAA

Translation (319 aa):
MFLCRFWGKMATNDAVLKRLEQKGAEADQIIEYLKQQVALLKEKAILQATMREEKKLRVENAKLKKEIEE
LKQELILAEIHNGVEQVRVRLSTPLQTNCTASESVVQSPSVATTASPATKEQIKAGEEKKVKEKTEKKGE
KKEKQQSAAASTDSKPIDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQ
NRMVVLLCNLKPAKMRGVLSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQ
IQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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