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Report for CCDS38591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38591.1 Public Mus musculus 3 Slc6a17 23 108 98 CCDS HistoryNCBI Gene:229706Re-query CCDS DB by CCDS ID:38591.1Re-query CCDS DB by GeneID:229706See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029499.14 ENSMUSP00000029499.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029499.14Link to Ensembl Protein Viewer:ENSMUSP00000029499.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029499Re-query CCDS DB by Protein ID:ENSMUSP00000029499
Original member Current member NCBI NM_172271.2 NP_758475.1 Accepted alive Link to Nucleotide Sequence:NM_172271.2Link to Protein Sequence:NP_758475.1Re-query CCDS DB by Nucleotide ID:NM_172271Re-query CCDS DB by Protein ID:NP_758475Link to BLAST:NP_758475.1

Chromosomal Locations for CCDS 38591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107471181 107471549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107472036 107472198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107473536 107473695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107474272 107474455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107476728 107476920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107477177 107477418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107491420 107491530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107493059 107493240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107493937 107494063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107495666 107495823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107500368 107500653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGCCGAAGAACAGCAAGGTGACCCAGCGCGAACACAGCAATGAGCATGTCACCGAGTCAGTGGCTGACT
TGCTGGCTCTGGAGGAGCCTGTGGACTACAAGCAGAGTGTACTGAACGTGGCCGGCGAGACAGGTGGCAA
GCAGAAGGTGGCGGAGGAGGAGCTGGACACAGAGGACCGGCCAGCCTGGAATAGCAAGCTGCAGTACATC
CTGGCCCAGATTGGCTTCTCTGTGGGCCTGGGCAACATCTGGAGGTTCCCCTACCTGTGCCAGAAAAATG
GAGGAGGTGCCTATCTGGTGCCCTATCTGGTGCTGCTTATCATCATTGGCATCCCCCTCTTCTTTCTGGA
GCTGGCTGTGGGCCAGAGGATCCGCCGTGGCAGCATTGGTGTGTGGCACTATGTGTGCCCCCGCCTGGGG
GGCATCGGCTTTTCCAGCTGTATTGTCTGCCTCTTCGTTGGGCTGTACTACAATGTGATCATTGGGTGGA
GCGTCTTCTATTTCTTCAAGTCTTTCCAGTACCCACTGCCCTGGAGTGAATGTCCTGTCATCAGGAATGG
GACTGTAGCAGTGGTGGAGCCTGAGTGTGAGAAGAGCTCAGCTACTACCTACTTTTGGTACCGAGAGGCC
TTGGACATCTCCAACTCGATTTCAGAGAGTGGGGGCCTCAACTGGAAGATGACACTCTGCCTCCTTGTGG
CCTGGAGCATCGTGGGCATGGCTGTCGTCAAGGGCATCCAGTCCTCTGGAAAGGTAATGTATTTCAGCTC
CCTCTTCCCTTATGTGGTGTTGGCCTGCTTCCTGGTCCGGGGGCTGCTGCTTCGAGGGGCAGTGGATGGC
ATCCTGCACATGTTCACTCCTAAGCTGGACAAGATGCTGGACCCCCAGGTGTGGCGGGAGGCAGCCACAC
AGGTCTTCTTCGCCCTGGGGCTGGGCTTTGGAGGCGTCATCGCCTTTTCCAGCTACAACAAACAGGACAA
TAACTGCCACTTCGATGCTGCCCTGGTGTCCTTCATCAACTTCTTCACCTCGGTGTTGGCCACCCTCGTG
GTGTTTGCTGTGCTGGGCTTCAAAGCCAACATCATGAATGAGAAGTGTGTGGTCGAGAATGCTGAGAAAA
TTCTAGGGTACCTCAACTCCAATGTCTTGAGCCGGGACCTCATCCCACCTCACGTCAACTTCTCACACCT
GACTACCAAGGACTACTCAGAGATGTACAGCGTCATCATGACTGTTAAGGAGAAGCAGTTCCCAGCCCTG
GGCCTGGATCCCTGCCTCTTGGAGGATGAGCTGGACAAGGGCACAGGCCTGGCCTTCATCGCCTTCACTG
AGGCCATGACACATTTCCCGGCCTCCCCGTTCTGGTCCGTCATGTTCTTCTTGATGCTCATCAACCTGGG
CCTGGGCAGCATGATCGGGACCATGGCAGGAATCACCACACCCATCATCGACACCTTCAAGGTGCCCAAG
GAGATGTTCACAGTTGGCTGCTGTGTCTTTGCATTCTTCGTGGGGCTGTTGTTCGTCCAGCGCTCCGGAA
ACTACTTTGTCACCATGTTTGATGACTATTCGGCCACCCTGCCACTCACCGTCATCGTCATCCTTGAGAA
CATCGCTGTGGCCTGGATTTATGGAACCAAGAAGTTTATGCAGGAGCTGACAGAGATGCTGGGCTTCCAG
CCGTATCGATTCTATTTCTACATGTGGAAGTTTGTGTCTCCACTGTGCATGGCTGTGCTCACCACAGCCA
GCATCATCCAGCTGGGGGTGTCGCCCCCAGGCTACAGTGCCTGGATCAAAGAGGAGGCTGCTGAGCGCTA
CTTGTACTTCCCCAACTGGGCCATGGCACTGCTGATCACCCTCATTGCCGTGGCCACCCTGCCCATCCCT
GTGGTGTTCATCCTGCGGCACTTCCACTTGCTCTCCGACGGGTCCAACACCCTCTCTGTGTCCTACAAGA
AGGGCCGCATGATGAAGGACATCTCCAATCTGGAGGAGAACGATGAGACGCGCTTCATCCTCAGCAAGGT
GCCCAGTGAGGCGCCCTCCCCCATGCCCACCCACCGCTCCTATCTGGGGCCTGGCAGCACATCACCCTTG
GATAACAGCAACAATCCCAACGGACGCTATGGAAGCGGCTACCTCTTGGCCAGCACCCCTGAGTCAGAGC
TGTGA

Translation (724 aa):
MPKNSKVTQREHSNEHVTESVADLLALEEPVDYKQSVLNVAGETGGKQKVAEEELDTEDRPAWNSKLQYI
LAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWHYVCPRLG
GIGFSSCIVCLFVGLYYNVIIGWSVFYFFKSFQYPLPWSECPVIRNGTVAVVEPECEKSSATTYFWYREA
LDISNSISESGGLNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDG
ILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLV
VFAVLGFKANIMNEKCVVENAEKILGYLNSNVLSRDLIPPHVNFSHLTTKDYSEMYSVIMTVKEKQFPAL
GLDPCLLEDELDKGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKVPK
EMFTVGCCVFAFFVGLLFVQRSGNYFVTMFDDYSATLPLTVIVILENIAVAWIYGTKKFMQELTEMLGFQ
PYRFYFYMWKFVSPLCMAVLTTASIIQLGVSPPGYSAWIKEEAAERYLYFPNWAMALLITLIAVATLPIP
VVFILRHFHLLSDGSNTLSVSYKKGRMMKDISNLEENDETRFILSKVPSEAPSPMPTHRSYLGPGSTSPL
DNSNNPNGRYGSGYLLASTPESEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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