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Report for CCDS38561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38561.1 Public Mus musculus 3 Chd1l 23 108 98 CCDS HistoryNCBI Gene:68058Re-query CCDS DB by CCDS ID:38561.1Re-query CCDS DB by GeneID:68058See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029730.4 ENSMUSP00000029730.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029730.4Link to Ensembl Protein Viewer:ENSMUSP00000029730.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029730Re-query CCDS DB by Protein ID:ENSMUSP00000029730
Original member NCBI NM_026539.2 NP_080815.1 Updated not alive Link to Nucleotide Sequence:NM_026539.2Link to Protein Sequence:NP_080815.1Re-query CCDS DB by Nucleotide ID:NM_026539Re-query CCDS DB by Protein ID:NP_080815
Current member NCBI NM_026539.3 NP_080815.1 Accepted alive Link to Nucleotide Sequence:NM_026539.3Link to Protein Sequence:NP_080815.1Re-query CCDS DB by Nucleotide ID:NM_026539Re-query CCDS DB by Protein ID:NP_080815Link to BLAST:NP_080815.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080815.1 900 Q9CXF7-1 900 100% 0 0

Chromosomal Locations for CCDS 38561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97561015 97561087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97562579 97562687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97563457 97563571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97566759 97566829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97569101 97569199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97570202 97570404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97570904 97571067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97572561 97572709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97580979 97581177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97582717 97582870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97583808 97583922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97587111 97587221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97588240 97588313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97589906 97590002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97590554 97590646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97591205 97591360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97594008 97594170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97597692 97597773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97602022 97602053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97603009 97603123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97603660 97603766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97605098 97605210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97610063 97610171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGCGAGCGGCTTGCCGCGCTTCCTGCAGGCGCTGCCGGCCGAACACGGGCCGGAGCCGCTTCGGACGC
GGGTGCAGGAACCGGACTTACAGCAGTGGGGCTTGACTGGGATTCGTCTACGTTCTTACCAACTGGAAGG
AGTCAATTGGCTAGTCCAGTGCTTCCATTGCCAGAATGGCTGCATCCTGGGAGATGAGATGGGCTTGGGG
AAGACCTGCCAGACTATCGCTCTCCTCATTTACTTGGTGGGGAGACTGAATGATGAAGGGCCGTTTCTGG
TTCTCTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAGATTTGCTCCAGGTCTTTCCTG
TGTGACATACACAGGTGACAAGGAGGAGAGAGCCCGCCTTCAGCAGGACCTAAGACAGGAGTCAGGTTTT
CACGTGCTGCTGACGACATACGAGATTTGCTTGAAAGATGCCTCATTTCTAAAATCCTTCTCTTGGAGCG
TTCTTGCTGTGGATGAAGCTCACAGATTGAAAAACCAGAGCTCCCTGCTGCACAGGACACTTTCAGAGTT
CTCAGCGGTCTTCCGTCTCCTGCTCACCGGAACGCCCATCCAGAACAGCCTCCGGGAGCTCTACTCCCTC
CTCTGTGTCGTGGAGCCTGACCTCTTCTGCAGAGAACAGGTGGAAGATTTCGTTCAGCGTTACCAGGACA
TCGAGAAAGAGTCCAAATCAGCAAGCGAGCTGCACAGGCTCTTGCAGCCATTTCTCCTGAGGCGTGTGAA
AGCTCAGGTAGCCACAGAGCTCCCCAAGAAGACAGAGGTGGTGGTGTACCACGGCATGTCCGCTCTGCAG
AAAAAGTACTACAAGGCCATCCTGATGAAAGACCTGGATGCATTTGAGAACGAGACAGCCAAGAAAGTCA
AACTCCAGAACATCCTGACGCAGCTTCGGAAGTGTGTGGACCACCCGTATCTGTTCGATGGTGTGGAACC
AGAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAAGCTTCACCTGCTGGACAGGCTGCTG
GCGTTTCTGTATTCTGGGGGCCATCGGGTTTTACTTTTCTCCCAGATGACACACATGCTGGATATTCTGC
AGGACTATATGGACTACAGAGGCTACAGCTACGAGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACA
CCTGGCCATTAAGAACTTTGGAAACCAGCCCATTTTTGTTTTTCTCCTGAGCACCCGGGCAGGTGGAGTG
GGCATGAACTTAACAGCGGCAGACACCGTCATTTTTGTCGACAGCGACTTCAACCCTCAGAATGACTTGC
AGGCGGCCGCCAGAGCTCACCGAATTGGCCAGAACAAGTCTGTTAAAGTCATCCGGCTGATCGGCCGCGA
CACCGTGGAAGAAATCGTGTATAGGAAGGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGA
GGTCATTTCACACCAGGAGCCCAGAAACCTTCAGCCGAGGCCGACTTCCAGTTAAGTGAGATTCTCAAAT
TCGGCTTGGATAAACTGCTGTCCTCTGAGGGGAGCTCCATGGAGGATATAGACCTGAAGTCCATCCTGGG
AGAAACCAAAGATGGCCAGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGCAGCAGGAGGAGGAAGCCTA
GAACCAGAGGAAGGAAGTGAATTGGAATCCAGGTCTTATGAAAACCACATGTACTTGTTTGAAGGTAGAG
ACTATTCTAAGGAGCCCAGTAAGGAAGACAGAAAGTCATTTGAGCAGCTGGTGAATCTTCAGAAAACCCT
TCTAGAGAAGACAAGCCATGGGGGCCGGACCCTCCGGAACAAAGGCAGCGTTCTTATCCCAGGCCTTGCA
GAAGGGCCCATCAAAAGGAAGAAGATCCTTAGCCCAGAGGAGCTGGAGGACAGACGGAAGAAAAGACAGG
AAGCAGCGGCCAAGAGGAAGAGACTGATGGAGGAGAAGAGGAAGGAGAAGGAGGAGGCTGAACACAGGAA
GAAGATGGCCTGGTGGGAATCCAACGGTTACCAGTCCTTCTGCCTGTCCTCGGAGGACAGCGAGCTTGAG
GACCTGGAGGGCGGAGATGAGTCTTCTGCCGAGCTGGCTTATGAAGATCTAGACTCAACCTCCATTAACT
ATGTTAGTGGCGACGTCACCCACCCCCAGGCTGGCGAAGAAGATGCTGTCATTGTGCACTGTGTAGATGA
TTCTGGCCGCTGGGGCAGAGGTGGCTTATTCACAGCTCTGGAAGTACGATCAGCTGAACCAAGAAAAATA
TACGAGCTGGCTGGGAAAATGGAAGACCTGAGTTTGGGTGATGTCCTTCTATTTCCTATCGACGATAAAG
AGTCACGAGACAAGGGGCAAGATCTGTTGGCCTTGGTTGTGGCTCAGCACCGTGATCGCACCAATGTCCT
GTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTAGCAGCAAAGAAAAAGAAA
GCAAGCGTTCATCTTCCACGAATTGGACATGCTACAAAGGGTTTTAACTGGTATGGTACCGAACGACTTA
TCCGGAAACATTTGGCTACACGAGGCATCCCAACTTACATATACTACTTTCCCAGAAGTAAGGCCCGCCA
TTCACAGCCTGCATCCTCCTCCTCAGCACCACTGGTTCCCTAG

Translation (900 aa):
MASGLPRFLQALPAEHGPEPLRTRVQEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLG
KTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGF
HVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSL
LCVVEPDLFCREQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQ
KKYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLL
AFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQPIFVFLLSTRAGGV
GMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG
GHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETKDGQWTPDALPAAAAAGGGSL
EPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRTLRNKGSVLIPGLA
EGPIKRKKILSPEELEDRRKKRQEAAAKRKRLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELE
DLEGGDESSAELAYEDLDSTSINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEVRSAEPRKI
YELAGKMEDLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKK
ASVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTYIYYFPRSKARHSQPASSSSAPLVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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