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Report for CCDS38438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38438.1 Public Mus musculus 3 Clrn1 23 108 98 CCDS HistoryNCBI Gene:229320Re-query CCDS DB by CCDS ID:38438.1Re-query CCDS DB by GeneID:229320See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051408.7 ENSMUSP00000051738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051408.7Link to Ensembl Protein Viewer:ENSMUSP00000051738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051408Re-query CCDS DB by Protein ID:ENSMUSP00000051738
Original member Current member NCBI NM_153385.3 NP_700434.1 Accepted alive Link to Nucleotide Sequence:NM_153385.3Link to Protein Sequence:NP_700434.1Re-query CCDS DB by Nucleotide ID:NM_153385Re-query CCDS DB by Protein ID:NP_700434Link to BLAST:NP_700434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700434.1 232 Q8K445-1 232 100% 0 0

Chromosomal Locations for CCDS 38438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58846186 58846451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58864972 58865151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58884788 58885040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGCCAAGCCAGCAGAAGAAGATCATCTTTTGCATGGCTGGCGTACTGAGCTTTCTCTGTGCTCTTGGAG
TGGTGACAGCAGTGGGCACCCCACTGTGGGTTAAAGCCACTATCCTCTGCAAAACAGGGGCTCTGCTTGT
CAACGCGTCAGGGAAGGAGCTGGACAAGTTCATGGGCGAGATGCAGTATGGCCTTTTCCACGGAGAAGGC
GTAAGGCAATGTGGGTTAGGAGCAAGGCCTTTCCGGTTCTCATTCTTCCCAGATTTGGTCCAAGCCATCC
CCGTAAGCATCCACATCAATATTATTCTCTTCTCCATGATTCTTGTCGTCTTAACCATGGTGGGGACAGC
CTTCTTCATGTACAATGCTTTTGGCAAGCCCTTTGAAACTCTTCATGGACCACTGGGGCTCTATCTGGTC
AGCTTCATTTCAGGCTCCTGTGGCTGTCTTGTCATGATATTGTTTGCCTCTGAAGTGAAAGTCCACCGCC
TTTCAGAGAAAATTGCAAATTTTAAAGAAGGGACCTATGCCTACAGAACACAAAACGAAAACTATACCAC
CTCATTCTGGGTTGTTTTCATTTGCTTTTTTGTTCATTTTTTGAATGGGCTCCTGATACGACTTGCTGGA
TTTCAGTTCCCTTTCACAAAATCTAAAGAAACAGAGACCACTAATGTAGCTTCAGATTTAATGTACTGA

Translation (232 aa):
MPSQQKKIIFCMAGVLSFLCALGVVTAVGTPLWVKATILCKTGALLVNASGKELDKFMGEMQYGLFHGEG
VRQCGLGARPFRFSFFPDLVQAIPVSIHINIILFSMILVVLTMVGTAFFMYNAFGKPFETLHGPLGLYLV
SFISGSCGCLVMILFASEVKVHRLSEKIANFKEGTYAYRTQNENYTTSFWVVFICFFVHFLNGLLIRLAG
FQFPFTKSKETETTNVASDLMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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