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Report for CCDS38332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38332.1 Public Mus musculus 2 Slc12a5 23 108 98 CCDS HistoryNCBI Gene:57138Re-query CCDS DB by CCDS ID:38332.1Re-query CCDS DB by GeneID:57138See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099092.7 ENSMUSP00000096690.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099092.7Link to Ensembl Protein Viewer:ENSMUSP00000096690.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099092Re-query CCDS DB by Protein ID:ENSMUSP00000096690
Original member Current member NCBI NM_020333.2 NP_065066.2 Accepted alive Link to Nucleotide Sequence:NM_020333.2Link to Protein Sequence:NP_065066.2Re-query CCDS DB by Nucleotide ID:NM_020333Re-query CCDS DB by Protein ID:NP_065066Link to BLAST:NP_065066.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065066.2 1115 Q91V14-2 1115 100% 0 0

Chromosomal Locations for CCDS 38332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164968403 164968454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164973687 164973781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164974448 164974579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164974907 164975053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164975884 164975938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164976433 164976563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164979279 164979520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164980155 164980366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164982812 164982982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164983206 164983304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164983504 164983561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164986605 164986779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164987111 164987229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164987534 164987632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164988530 164988649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164989002 164989106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164990244 164990412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164992311 164992506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164993640 164993809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164993980 164994111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164994930 164995037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164996107 164996229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164996322 164996518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164996864 164996878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164997110 164997243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164997380 164997471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGCTCAACAACCTGACGGACTGCGAGGACGGCGATGGGGGAGCCAACCCCGGTGATGGCAACCCCAAAG
AGAGCAGTCCCTTCATCAACAGCACGGACACGGAGAAGGGCAGAGAGTACGATGGCAGGAACATGGCCCT
GTTTGAGGAGGAGATGGACACCAGCCCCATGGTATCCTCCCTGCTCAGTGGGCTGGCCAACTACACCAAC
CTACCCCAGGGAAGTAGAGAGCATGAAGAAGCAGAAAATAATGAGGGTGGAAAAAAGAAGCCGGTGCAGG
CTCCTCGAATGGGCACCTTCATGGGTGTGTACCTGCCGTGCCTGCAGAACATCTTTGGTGTCATCCTCTT
CCTGCGGCTCACGTGGGTGGTGGGCATCGCGGGCATCATGGAGTCCTTCTGTATGGTCTTCATTTGCTGC
TCCTGTACGATGCTCACAGCCATTTCCATGAGTGCAATCGCAACCAATGGTGTTGTGCCTGCTGGTGGCT
CGTACTACATGATTTCCAGGTCTCTGGGCCCGGAGTTTGGGGGCGCCGTGGGCCTCTGCTTCTACCTGGG
CACCACCTTTGCTGGGGCTATGTACATCCTTGGCACGATCGAGATCCTGCTGGCTTATCTCTTCCCAGCT
ATGGCCATCTTCAAGGCAGAAGATGCCAGTGGGGAGGCGGCCGCCATGCTGAACAACATGCGGGTGTATG
GCACCTGTGTGCTCACCTGCATGGCCACCGTTGTCTTTGTGGGTGTCAAGTACGTCAACAAGTTTGCCTT
GGTCTTCCTGGGTTGCGTCATCCTGTCCATCCTGGCCATCTATGCAGGGGTCATCAAGTCTGCCTTCGAC
CCACCCAATTTCCCGATCTGCCTCCTGGGGAACCGCACGCTGTCTCGCCATGGCTTTGATGTCTGTGCCA
AGCTGGCTTGGGAAGGAAATGAGACAGTGACCACACGGCTCTGGGGCCTTTTCTGCTCCTCCCGCCTCCT
CAATGCCACCTGTGATGAGTACTTCACCCGAAACAATGTCACAGAGATCCAGGGCATTCCTGGTGCTGCC
AGTGGTCTCATCAAAGAGAACCTGTGGAGTTCTTACCTGACCAAAGGGGTGATTGTCGAGAGGCGTGGGA
TGCCCTCTGTGGGCCTGGCAGACGGTACCCCCGTAGACATGGACCACCCCTATGTCTTCAGTGATATGAC
CTCCTACTTCACCCTGCTCGTTGGTATCTACTTCCCCTCAGTCACAGGGATCATGGCTGGCTCAAACCGA
TCTGGAGACCTGCGGGATGCCCAGAAGTCTATCCCTACTGGAACTATCCTGGCCATTGCTACCACCTCTG
CTGTCTACATCAGCTCTGTTGTTCTGTTTGGAGCCTGCATCGAGGGGGTCGTCTTACGGGACAAGTTTGG
GGAAGCTGTGAATGGCAACTTGGTGGTGGGCACCCTGGCCTGGCCTTCTCCCTGGGTCATCGTCATAGGC
TCTTTCTTCTCTACCTGTGGGGCTGGATTACAGAGCCTCACAGGGGCCCCACGTCTGCTGCAGGCCATCT
CCCGGGATGGCATAGTGCCCTTCCTGCAGGTCTTTGGCCATGGCAAAGCTAATGGAGAGCCAACCTGGGC
GCTGCTGCTGACTGCCTGCATCTGTGAGATCGGCATCCTCATAGCCTCCCTGGATGAGGTCGCCCCTATA
CTTTCCATGTTCTTCCTAATGTGTTACATGTTTGTGAACTTGGCTTGTGCGGTGCAGACGCTGCTGAGGA
CACCCAACTGGAGGCCACGATTTCGCTATTACCACTGGACTCTCTCCTTCCTGGGCATGAGCCTCTGCCT
GGCCCTCATGTTCATTTGCTCCTGGTACTACGCACTGGTGGCCATGCTCATTGCCGGACTCATTTATAAG
TACATCGAGTACCGGGGGGCGGAGAAGGAGTGGGGGGATGGAATCCGAGGCCTGTCTCTCAGTGCAGCAC
GCTATGCTCTCTTGCGCCTGGAGGAAGGACCTCCGCATACGAAGAACTGGAGGCCCCAGCTGCTGGTGCT
GGTGCGTGTGGACCAGGATCAGAACGTGGTGCATCCGCAGCTGCTCTCCCTGACCTCCCAGCTCAAGGCA
GGGAAGGGCCTGACCATTGTGGGCTCCGTCCTTGAGGGCACCTTTCTGGACAACCATCCACAGGCTCAGC
GGGCAGAGGAGTCTATCAGGCGCCTGATGGAGGCTGAGAAGGTGAAGGGCTTCTGCCAGGTAGTGATCTC
CTCCAACCTGCGTGATGGTGTGTCCCACCTGATCCAGTCTGGGGGCCTCGGGGGATTGCAACACAATACC
GTGCTGGTGGGCTGGCCTCGCAACTGGAGGCAGAAGGAGGATCATCAGACATGGAGGAACTTCATCGAAC
TGGTCCGGGAAACTACAGCCGGCCACCTCGCCCTGCTGGTCACCAAGAATGTTTCCATGTTTCCCGGGAA
CCCTGAGCGCTTCTCGGAGGGCAGCATTGACGTGTGGTGGATTGTGCACGACGGGGGCATGCTCATGCTG
CTGCCCTTCCTGCTGCGACACCACAAGGTCTGGAGGAAATGCAAAATGCGGATCTTCACCGTGGCCCAGA
TGGACGATAACAGTATCCAGATGAAGAAGGACCTGACCACGTTTCTGTACCACTTACGCATTACTGCAGA
GGTGGAGGTGGTGGAGATGCATGAGAGCGACATCTCGGCATACACCTACGAGAAGACATTAGTAATGGAG
CAACGATCTCAGATCCTCAAACAGATGCACCTCACCAAGAACGAGCGGGAACGGGAGATCCAGAGCATCA
CAGACGAGTCTCGGGGCTCCATTCGGAGGAAGAATCCAGCCAACCCCCGGCTCCGCCTCAATGTTCCCGA
AGAGACAGCGTGTGACAATGAGGAGAAGCCAGAGGAGGAGGTGCAGCTGATCCATGACCAGAGTGCTCCC
AGCTGCCCTAGCAGCTCGCCATCTCCAGGGGAGGAGCCCGAGGGGGAGAGGGAGACAGACCCAGAGGTGC
ATCTTACCTGGACCAAGGATAAGTCAGTGGCAGAGAAGAATAAAGGCCCCAGTCCCGTCTCCTCCGAGGG
CATCAAGGACTTCTTCAGCATGAAGCCGGAGTGGGAAAACTTGAACCAGTCCAATGTACGGCGCATGCAC
ACAGCTGTGCGGCTGAACGAGGTCATCGTGAATAAATCTCGGGATGCCAAGCTAGTTTTGCTCAACATGC
CCGGGCCTCCCCGCAACCGCAATGGGGATGAAAACTACATGGAATTCTTGGAGGTCCTCACTGAGCAACT
GGACCGGGTGATGCTGGTCCGCGGTGGCGGCCGAGAGGTCATCACCATCTACTCCTGA

Translation (1115 aa):
MLNNLTDCEDGDGGANPGDGNPKESSPFINSTDTEKGREYDGRNMALFEEEMDTSPMVSSLLSGLANYTN
LPQGSREHEEAENNEGGKKKPVQAPRMGTFMGVYLPCLQNIFGVILFLRLTWVVGIAGIMESFCMVFICC
SCTMLTAISMSAIATNGVVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEILLAYLFPA
MAIFKAEDASGEAAAMLNNMRVYGTCVLTCMATVVFVGVKYVNKFALVFLGCVILSILAIYAGVIKSAFD
PPNFPICLLGNRTLSRHGFDVCAKLAWEGNETVTTRLWGLFCSSRLLNATCDEYFTRNNVTEIQGIPGAA
SGLIKENLWSSYLTKGVIVERRGMPSVGLADGTPVDMDHPYVFSDMTSYFTLLVGIYFPSVTGIMAGSNR
SGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFGEAVNGNLVVGTLAWPSPWVIVIG
SFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWALLLTACICEIGILIASLDEVAPI
LSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIAGLIYK
YIEYRGAEKEWGDGIRGLSLSAARYALLRLEEGPPHTKNWRPQLLVLVRVDQDQNVVHPQLLSLTSQLKA
GKGLTIVGSVLEGTFLDNHPQAQRAEESIRRLMEAEKVKGFCQVVISSNLRDGVSHLIQSGGLGGLQHNT
VLVGWPRNWRQKEDHQTWRNFIELVRETTAGHLALLVTKNVSMFPGNPERFSEGSIDVWWIVHDGGMLML
LPFLLRHHKVWRKCKMRIFTVAQMDDNSIQMKKDLTTFLYHLRITAEVEVVEMHESDISAYTYEKTLVME
QRSQILKQMHLTKNEREREIQSITDESRGSIRRKNPANPRLRLNVPEETACDNEEKPEEEVQLIHDQSAP
SCPSSSPSPGEEPEGERETDPEVHLTWTKDKSVAEKNKGPSPVSSEGIKDFFSMKPEWENLNQSNVRRMH
TAVRLNEVIVNKSRDAKLVLLNMPGPPRNRNGDENYMEFLEVLTEQLDRVMLVRGGGREVITIYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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