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Report for CCDS38189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38189.1 Public Mus musculus 2 Slc1a2 23 108 98 CCDS HistoryNCBI Gene:20511Re-query CCDS DB by CCDS ID:38189.1Re-query CCDS DB by GeneID:20511See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111212.7 ENSMUSP00000106843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111212.7Link to Ensembl Protein Viewer:ENSMUSP00000106843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111212Re-query CCDS DB by Protein ID:ENSMUSP00000106843
Original member Current member NCBI NM_001077515.2 NP_001070983.1 Accepted alive Link to Nucleotide Sequence:NM_001077515.2Link to Protein Sequence:NP_001070983.1Re-query CCDS DB by Nucleotide ID:NM_001077515Re-query CCDS DB by Protein ID:NP_001070983Link to BLAST:NP_001070983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070983.1 569 P43006-2 569 100% 0 0

Chromosomal Locations for CCDS 38189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102706476 102706483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102735944 102736083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102737777 102737929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102739689 102739939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102743808 102743973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102748469 102748595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102755907 102756140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102761015 102761209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102766933 102767067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102777427 102777655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102781463 102781534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGTCAGTGCCAACAATATGCCCAAGCAGGTAGAAGTGCGCATGCATGACAGCCACCTCAGCTCCGATG
AGCCAAAGCACCGAAACCTGGGCATGCGCATGTGCGACAAGCTGGGGAAAAATCTCCTGCTCTCACTGAC
TGTGTTTGGTGTCATCCTGGGAGCAGTGTGTGGCGGGCTGCTTCGCTTGGCATCGCCCATCCACCCTGAT
GTGGTCATGTTGATAGCCTTCCCGGGGGACATACTCATGAGGATGCTGAAGATGCTCATCCTCCCTCTTA
TCATCTCCAGTTTAATCACAGGGTTGTCAGGCCTGGATGCTAAAGCCAGCGGCCGCCTAGGCACGAGAGC
TATGGTGTATTACATGTCCACGACCATCATTGCCGCCGTGCTGGGGGTCATCCTGGTGTTGGCCATCCAC
CCAGGCAATCCCAAACTCAAGAAGCAGCTAGGGCCCGGGAAGAAGAACGACGAGGTGTCTAGCCTGGATG
CCTTCCTGGATCTCATTAGAAATCTCTTCCCGGAGAACCTGGTGCAAGCCTGTTTCCAGCAGATTCAGAC
AGTGACAAAGAAAGTTCTGGTGGCACCTCCATCTGAGGAGGCCAATACCACCAAGGCGGTCATCTCCATG
TTGAATGAAACCATGAACGAGGCCCCTGAAGAAACTAAGATCGTTATCAAGAAGGGCCTGGAGTTCAAGG
ACGGGATGAACGTCTTAGGTCTGATCGGATTCTTTATTGCTTTCGGCATTGCCATGGGGAAGATGGGTGA
ACAGGCCAAGCTGATGGTGGAGTTCTTCAACATTCTGAATGAGATCGTGATGAAGTTAGTGATCATGATC
ATGTGGTACTCCCCTCTGGGTATCGCCTGCTTGATTTGTGGGAAGATCATCGCCATCAAGGACTTAGAAG
TGGTTGCTAGGCAGCTGGGGATGTACATGATCACCGTGATCGTGGGCCTCATCATTCACGGGGGCATCTT
TCTCCCCTTGATTTACTTTGTAGTGACCAGAAAAAATCCATTCTCCTTTTTTGCTGGCATATTCCAAGCC
TGGATCACTGCTCTGGGAACTGCTTCCAGTGCTGGAACTTTGCCTGTTACCTTCCGTTGCTTGGAAGATA
ATCTAGGGATTGACAAGCGTGTGACCAGATTCGTCCTCCCAGTCGGAGCAACCATTAACATGGATGGCAC
AGCCCTTTACGAGGCTGTGGCAGCCATCTTCATAGCCCAAATGAATGGGGTCATCTTGGATGGAGGTCAG
ATTGTGACTGTAAGCCTTACAGCCACCCTGGCGAGCATTGGTGCAGCCAGTATTCCCAGCGCCGGGCTGG
TCACCATGCTCCTCATTCTCACAGCTGTGGGCCTGCCAACGGAGGATATCAGTCTGCTGGTGGCGGTGGA
CTGGCTGCTGGATAGAATGAGAACTTCAGTCAATGTGGTGGGCGATTCTTTTGGGGCTGGGATTGTCTAT
CACCTTTCCAAGTCTGAGCTGGACACCATTGACTCCCAACACCGAATGCAGGAAGACATCGAAATGACCA
AGACGCAGTCCATTTACGACGACAAGAACCACAGGGAAAGCAACTCTAATCAGTGTGTCTATGCCGCACA
CAACTCTGTCGTAATAGATGAGTGCAAGGTAACTCTGGCGGCCAATGGAAAGTCAGCTGACTGCAGTGTT
GAGGAAGAACCTTGGAAACGTGAAAAATAA

Translation (569 aa):
MVSANNMPKQVEVRMHDSHLSSDEPKHRNLGMRMCDKLGKNLLLSLTVFGVILGAVCGGLLRLASPIHPD
VVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIH
PGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSEEANTTKAVISM
LNETMNEAPEETKIVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGEQAKLMVEFFNILNEIVMKLVIMI
MWYSPLGIACLICGKIIAIKDLEVVARQLGMYMITVIVGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQA
WITALGTASSAGTLPVTFRCLEDNLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVILDGGQ
IVTVSLTATLASIGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVY
HLSKSELDTIDSQHRMQEDIEMTKTQSIYDDKNHRESNSNQCVYAAHNSVVIDECKVTLAANGKSADCSV
EEEPWKREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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