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Report for CCDS38030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38030.1 Public Mus musculus 19 Pnliprp2 23 108 98 CCDS HistoryNCBI Gene:18947Re-query CCDS DB by CCDS ID:38030.1Re-query CCDS DB by GeneID:18947See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026081.4 ENSMUSP00000026081.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026081.4Link to Ensembl Protein Viewer:ENSMUSP00000026081.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026081Re-query CCDS DB by Protein ID:ENSMUSP00000026081
Original member Current member NCBI NM_011128.2 NP_035258.2 Accepted alive Link to Nucleotide Sequence:NM_011128.2Link to Protein Sequence:NP_035258.2Re-query CCDS DB by Nucleotide ID:NM_011128Re-query CCDS DB by Protein ID:NP_035258Link to BLAST:NP_035258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035258.2 482 P17892 482 100% 0 0

Chromosomal Locations for CCDS 38030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58759789 58759876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58760353 58760507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58761566 58761691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58762250 58762384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58763329 58763440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58764728 58764847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58766262 58766381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58768564 58768682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58771334 58771463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58774070 58774181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58775138 58775305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58777418 58777481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGCCTATGGATGTCCGTGGATGTCTGTTTCCATCCGTGCAGATGTTGCTCTGCTGGCTCGTCAGCCTTC
TGCTGGCCACAGTCGGAGGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTG
GGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTT
CTGTACACAAACGAGAATCCAAACAACTACCAAATAATCTCTGCCACCGACCCAGCCACCATCAATGCTT
CCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTG
GTTGCTGGACATGTGCAAGAAAATGTTTCAAGTGGAGAAAGTGAACTGTATTTGCGTTGACTGGAAGCGC
GGATCCAGGACTGAATACACCCAAGCCTCCTACAACACTCGGGTCGTGGGCGCTGAGATTGCCTTCTTGG
TGCAAGTGTTGTCGACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTC
ACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAGGGCTGGACCCTGCA
GAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGA
TCCACACTGACAGTGCCCCCATAATCCCCTATCTAGGTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGA
TTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATC
AATGGAATATGGGAAGGAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCA
GCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCACAATGA
CTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACT
GCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTCGTTGGAGATACAAAG
TATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGG
AAACTCAAAGCAGTATGAAGTTTTCAAAGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGAT
GTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCC
GGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGAGTTCAACTTCTGTAG
CAGCAACACTGTGCATGAAGATGTTCTGCAGTCTCTGTACCCTTGTTAA

Translation (482 aa):
MPMDVRGCLFPSVQMLLCWLVSLLLATVGGKEVCYGHLGCFSNDKPWAGMIQRPSKIFPWSPEDIDTRFL
LYTNENPNNYQIISATDPATINASNFQLDRKTRFIIHGFIDKGEEGWLLDMCKKMFQVEKVNCICVDWKR
GSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGSHVAGEAGRRLEGHVGRITGLDPA
EPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDI
NGIWEGTRNFAACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQHNDCFPCPEQGCPKMGHYADQFEGKT
ATVEQTFFLNTGDSGNFTRWRYKVSVTLSGAKKLSGYILVALYGCNGNSKQYEVFKGSLQPEARYIRDID
VDVNVGEIQKVKFLWNNKVINLFRPTMGASQITVQRGKDGKEFNFCSSNTVHEDVLQSLYPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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