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Report for CCDS37951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37951.1 Public Mus musculus 19 Ric1 23 108 98 CCDS HistoryNCBI Gene:226089Re-query CCDS DB by CCDS ID:37951.1Re-query CCDS DB by GeneID:226089See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043610.12 ENSMUSP00000043437.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043610.12Link to Ensembl Protein Viewer:ENSMUSP00000043437.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043610Re-query CCDS DB by Protein ID:ENSMUSP00000043437
Original member Current member NCBI NM_001081319.1 NP_001074788.1 Accepted alive Link to Nucleotide Sequence:NM_001081319.1Link to Protein Sequence:NP_001074788.1Re-query CCDS DB by Nucleotide ID:NM_001081319Re-query CCDS DB by Protein ID:NP_001074788Link to BLAST:NP_001074788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074788.1 1422 Q69ZJ7-1 1422 99.9297% 0 1

Chromosomal Locations for CCDS 37951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29522523 29522666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29533165 29533272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29541256 29541335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29561985 29562092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29567220 29567362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29567485 29567621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29569342 29569433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29570746 29570834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29574732 29574876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29575854 29575902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29577583 29577735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29579765 29579968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29584175 29584213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29584467 29584577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29585781 29585870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29586540 29586700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29587708 29587846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29594799 29594915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29595271 29595999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29597747 29597905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29597990 29598126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29599832 29600118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29600818 29601009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29602273 29602450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29602592 29602780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29603861 29604149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4269 nt):
ATGTATTTCCTGAGCGGCTGGCCCAAGAGGCTGCTCTGCGCGCCGCGGAGCCCGGCCGAGGCGCCGCTCC
ACGTCCAGTCTGACCCTCGGAGAGCGTTCTTCGCCGTGCTGGCCCCGGCCCGCCTCAGCATCTGGTACAG
CCGACCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAA
CAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCAACAGCAAATGGCTACATCTTGTTTTTTC
ATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAAAGGAAGTCCACAAATGAA
GGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGAT
TTGCAAGCACCCATTATGAGTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTC
TTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTC
AGTAGACCTCCAGTCATCCAGAGTTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAA
TACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTAT
CCAGTAGATTTACGGCAGAGCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGC
AGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAGTGGCTGTGTGCAGGTTTATACAATCGAC
AACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTGACATCTGGA
ACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATA
TGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGCTTAC
AGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATGAGCTGGGGTGCAGAAGGCTATCACT
TATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGA
GCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATGAGTAACCAAGAG
CAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGA
AGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGA
GGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAGATTTCCAGCACCTATCTA
GAAAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGT
TTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGGAGCAAAA
TATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGAC
CGTCAAGAAGAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAG
CACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAAT
ATGCCTTTACAGTATTGAAAGAAAATCCGATGGTTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAG
GTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAG
AGAATGGCATCAGCTTGAAAATGCCGCAGCAGGCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGG
ACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAA
AGGAAGCTTCTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTC
GAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGT
TTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCG
TTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACA
CTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTG
TGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGC
GAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGC
TCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGC
CAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCT
CTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGG
ATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCAGCAGTAAGTAGGCAGCA
TGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTT
CTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGGAGCCCAGTTCAA
GTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGG
TAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGATGGAGCAAAGACAGT
GAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGC
GCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACG
TACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCA
CTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAGTGGGAGAGC
AGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCA
ACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGA
CCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGGGGATGAGTGCAGCATTGGCTCAGCTA
CAGACCTGACTGAAAGCAGCTCCGTGGTGGATGGAGACTGGACAATGGTGGATGAAAACTTCTCCACCCT
CAGCTTGACCCAGTCTGAGCTAGAGCACATCTCCATGGAGTTGGCGAGTAAAGGACCCCATAAATCTCAG
GTCCAGCTTCGCTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCC
TGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGA
GATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTGCCCTGGATAT
AAGCCATTTTTAAACATCATTAAGCCACAACTGCAGAAGCTCAGTGAGATAACAGAAGAACTGGTCCAGC
CTGACACCTTCCAGCCAGTAACAGTGGGTAAGACTCCTGAACAGACCAGTCCCCGGGCAGAGGAGAACAG
AGGCTCTTGCAGCCATGGGAGCATCTCTCAGAGTGAGCCTGGGAGTAACAACGTGGTCAGCCGGAAAGAA
GAGGACACAACACAGGCGGATGAGGAGGAGCCACTTCAGGATGGGGCTTATGACTGTTCTGTGTCCTGA

Translation (1422 aa):
MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYSRPSVLIVTYKEPAKSSTQFGSYK
QAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCAPALNLEMKKILD
LQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDME
YCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYTID
NTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSVFGAQLICTLGGDFAY
RSDGTKKDPLKINSMSWGAEGYHLWVISGLGSQHTQIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQE
QVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYL
ESNWPIRFSAIDKLGQNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSD
RQEELRIYLRTSNLDNAFAHVTKAPMETLLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQE
VSMSRYIPHPFLVVSVTLTSVSTENGISLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQ
RKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLP
FHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRSSAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLG
EQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYA
LWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRF
LKAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTGPSGKRWSKDS
ECAENMYIDMMLWRHARRLLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWP
LPIIPASSISSPFKNGKCRAVGEQMLKSQSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPG
PQMQDAFLSPLSNKGDECSIGSATDLTESSSVVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQ
VQLRYLLHIFMEAGCLDWCVVIGLILRESSVVSQLLGIAQSSEMDGEMLQNIKSGLQAVDRWASTDCPGY
KPFLNIIKPQLQKLSEITEELVQPDTFQPVTVGKTPEQTSPRAEENRGSCSHGSISQSEPGSNNVVSRKE
EDTTQADEEEPLQDGAYDCSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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