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Report for CCDS37933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37933.1 Public Mus musculus 19 Rorb 23 108 98 CCDS HistoryNCBI Gene:225998Re-query CCDS DB by CCDS ID:37933.1Re-query CCDS DB by GeneID:225998See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040153.14 ENSMUSP00000047597.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040153.14Link to Ensembl Protein Viewer:ENSMUSP00000047597.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040153Re-query CCDS DB by Protein ID:ENSMUSP00000047597
Original member Current member NCBI NM_146095.4 NP_666207.3 Accepted alive Link to Nucleotide Sequence:NM_146095.4Link to Protein Sequence:NP_666207.3Re-query CCDS DB by Nucleotide ID:NM_146095Re-query CCDS DB by Protein ID:NP_666207Link to BLAST:NP_666207.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666207.3 470 Q8R1B8-2 470 100% 0 0

Chromosomal Locations for CCDS 37933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18937880 18938035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18952158 18952270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18955042 18955152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18957227 18957334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18960409 18960541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18962025 18962146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18977581 18977982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18983342 18983483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18988031 18988116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19001007 19001046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGTGTGAGAACCAGCCCAAAACTAAAGCTGACGGCACTGCACAAATTGAAGTGATACCATGCAAAATTT
GTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAGGGATTCTTCAGGAG
GAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGG
AACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATGCTGTAAAGTTCG
GGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGA
GCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGC
CTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCG
AAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAA
ACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAAC
AACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCGATCGAATTGCACAGAACATCATTAAGTCCC
ATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGA
AATCAAGGCGTATCAAAGCAAGTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCT
ATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCT
TACTTCTGAAGTCAGGTTGCTTGGAAGTGGTTTTAGTGAGAATGTGTCGTGCCTTCAACCCATTAAACAA
CACTGTTCTGTTTGAAGGAAAATATGGAGGAATGCAAATGTTCAAAGCCTTAGGTTCGGATGACCTAGTG
AATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCT
CCTCTGCTGTTCTGATATCCCCAGACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGA
AAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAGTTA
ATAGCCAAGATACCAACTATCACGGCAGTCTGCAACTTGCATGGGGAGAAGCTGCAGGTATTTAAGCAGT
CTCATCCAGACATAGTGAATACACTGTTTCCTCCATTGTACAAGGAGCTCTTTAATCCTGACTGTGCTGC
GGTCTGCAAATGA

Translation (470 aa):
MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNR
NRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNG
LSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFN
NGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHA
IQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLV
NEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKL
IAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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