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Report for CCDS37752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37752.1 Public Mus musculus 18 Pik3c3 23 108 98 CCDS HistoryNCBI Gene:225326Re-query CCDS DB by CCDS ID:37752.1Re-query CCDS DB by GeneID:225326See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115812.9 ENSMUSP00000111479.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115812.9Link to Ensembl Protein Viewer:ENSMUSP00000111479.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115812Re-query CCDS DB by Protein ID:ENSMUSP00000111479
Original member Current member NCBI NM_181414.6 NP_852079.2 Accepted alive Link to Nucleotide Sequence:NM_181414.6Link to Protein Sequence:NP_852079.2Re-query CCDS DB by Nucleotide ID:NM_181414Re-query CCDS DB by Protein ID:NP_852079Link to BLAST:NP_852079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852079.2 887 Q6PF93-1 887 100% 0 0

Chromosomal Locations for CCDS 37752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 30272951 30273018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30274269 30274457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30276972 30277115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30281957 30282086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30288751 30288837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30290471 30290566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30293059 30293130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30293619 30293723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30294336 30294428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30298573 30298758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30302920 30303074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30303566 30303656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30304975 30305042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30311220 30311325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30312552 30312668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30316843 30316974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30319501 30319629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30320234 30320303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30322170 30322234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30323522 30323606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30324544 30324618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30333161 30333329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30336094 30336184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30343951 30344076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 30347723 30347737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGGGGGAGGCGGAGAAGTTCCACTACATCTACAGCTGTGACCTGGACATCAACGTGCAGCTGAAGATAG
GGAGCTTGGAAGGGAAGAGAGAACAAAAGAGCTATAAAGCTGTCCTAGAAGATCCCATGTTAAAGTTTTC
TGGGCTATACCAAGAGACATGCTCCGACCTCTATGTGACTTGTCAAGTGTTTGCTGAAGGGAAGCCCCTG
GCCTTACCAGTCAGAACATCCTACAAGGCGTTTAGTACAAGATGGAATTGGAACGAGTGGCTGAAACTTC
CGGTGAAGTACCCTGACCTGCCCAGGAATGCCCAAGTGGCCTTGACTATATGGGATGTGTATGGACCGGG
AAGCGCTGTGCCAGTGGGAGGAACAACCGTGTCGCTCTTTGGAAAATATGGCATGTTTCGCCAAGGAATG
CATGACTTGAAGGTCTGGCCTAACGTGGAGGCAGATGGTTCTGAACCTACAAGAACTCCCGGCAGAACAA
GCAGCACACTGTCAGAAGATCAGATGAGCCGCCTCGCCAAGCTCACCAAGGCTCATCGGCAAGGACACAT
GGTGAAAGTGGATTGGCTGGACAGATTAACATTTAGAGAGATAGAAATGATAAATGAGAGTGAGAAACGA
AGCTCTAATTTCATGTACTTGATGGTTGAGTTTCGCTGTGTCAAGTGCGATGACAAGGAGTATGGCATTG
TTTACTATGAAAAGGATGGTGACGAATCATCTCCAATTTTAACCAGTTTTGAGTTAGTGAAAGTTCCTGA
TCCTCAAATGTCTATGGAGAATTTAGTGGAGAGCAAACACCACAAGCTTGCTCGGAGCTTAAGAAGCGGG
CCATCTGACCACGATCTCAAACCCAACGCTACCACAAGAGATCAGCTAAATATTATTGTGAGTTACCCAC
CAACCAAGCAACTCACATATGAAGAACAAGATCTTGTTTGGAAATTTAGATATTATCTTACTAATCAAGA
AAAAGCTCTGACGAAGTTCTTGAAGTGTGTTAATTGGGACCTGCCCCAGGAGGCCAAGCAGGCCCTGGAA
CTTCTGGGAAAGTGGAAGCCAATGGATGTAGAGGACTCCCTGGAGCTGCTCTCCTCTCATTACACCAACC
CCACCGTGAGGCGCTACGCTGTGGCCCGCCTGAGGCAGGCCGATGATGAGGATTTGCTGATGTACTTACT
GCAGCTGGTCCAGGCTCTGAAATATGAAAACTTTGATGACATAAAGAATGGTTTGGAACCTACCAAGAAA
GATAGTCAAACTTCAGCATCAGAAAGTCTGTCAAATTCTGGAGTCAGTTCTGGAGACATAGATAGCTCCC
AAATTATAACCAACCCTCTTCCTCCCGTGGCCTCCCCTCCTCCTGCATCTAAAGCAAAGGAAGTTTCCGA
TGGGGAAAATCTCGAGCAAGATCTATGTACGTTCTTGATATCAAGAGCCTGTAAGAACTCAACACTGGCT
AATTATTTATACTGGTATGTGATAGTGGAGTGTGAAGATCAGGACACCCAGCAGCGGGACCCAAAGACTC
ACGAGATGTACCTGAACGTGATGAGGCGCTTCAGCCAAGCCTTGCTCAAGGGTGACAAGTCTGTGAGAGT
CATGCGCTCCCTGCTGGCGGCTCAGCAGACCTTTGTAGATCGCCTGGTCCATCTGATGAAGGCGGTGCAG
AGAGAAAGTGGGAACCGCAAGAAGAAGAATGAGAGACTTCAGGCCTTGCTTGGAGATAATGAGAAAATGA
ACTTATCAGATGTGGAACTGATCCCATTGCCGCTGGAGCCACAGGTGAAAATAAGGGGCATCATCCCGGA
AACAGCTACCCTGTTCAAGAGTGCTCTTATGCCTGCCCAGCTGTTCTTCAAGACTGAAGATGGAGGCAAA
TACCCAGTTATTTTCAAGCATGGAGACGACTTGCGTCAAGATCAGCTTATTCTTCAGATCATCTCCCTCA
TGGACAAGCTGTTACGGAAAGAAAACCTGGATTTGAAATTGACCCCATACAAGGTGTTAGCCACTAGCAC
AAAACATGGCTTCATGCAGTTCATCCAGTCGGTTCCTGTCGCAGAAGTTCTTGACACAGAGGGAAGCATT
CAGAACTTTTTCAGGAAATATGCCCCCAGTGAGACTGGACCCTATGGCATCAGTGCAGAGGTCATGGACA
CTTACGTTAAAAGCTGTGCTGGATACTGTGTGATTACGTACATTCTTGGAGTTGGAGACCGGCACCTGGA
TAACCTTTTGTTAACAAAGACAGGCAAACTCTTCCATATAGATTTCGGGTATATTTTGGGTCGAGATCCG
AAGCCCCTCCCTCCTCCGATGAAGCTGAACAAGGAGATGGTGGAAGGGATGGGTGGCACCCAGAGTGAGC
AGTACCAAGAGTTCCGAAAGCAGTGCTACACAGCCTTCCTCCACCTGCGAAGGTATTCCAATCTGATCTT
GAACTTGTTCTCCTTGATGGTTGATGCAAACATTCCAGATATTGCTCTTGAACCAGATAAAACTGTAAAA
AAGGTTCAGGATAAGTTCCGCCTGGACCTGTCAGATGAGGAGGCTGTGCACTACATGCAGAGTCTGATCG
ACGAGAGCGTCCACGCACTGTTCGCCGCCGTGGTGGAGCAGATCCATAAGTTTGCCCAGTACTGGAGAAA
ATGA

Translation (887 aa):
MGEAEKFHYIYSCDLDINVQLKIGSLEGKREQKSYKAVLEDPMLKFSGLYQETCSDLYVTCQVFAEGKPL
ALPVRTSYKAFSTRWNWNEWLKLPVKYPDLPRNAQVALTIWDVYGPGSAVPVGGTTVSLFGKYGMFRQGM
HDLKVWPNVEADGSEPTRTPGRTSSTLSEDQMSRLAKLTKAHRQGHMVKVDWLDRLTFREIEMINESEKR
SSNFMYLMVEFRCVKCDDKEYGIVYYEKDGDESSPILTSFELVKVPDPQMSMENLVESKHHKLARSLRSG
PSDHDLKPNATTRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQEAKQALE
LLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYENFDDIKNGLEPTKK
DSQTSASESLSNSGVSSGDIDSSQIITNPLPPVASPPPASKAKEVSDGENLEQDLCTFLISRACKNSTLA
NYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQ
RESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQVKIRGIIPETATLFKSALMPAQLFFKTEDGGK
YPVIFKHGDDLRQDQLILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQFIQSVPVAEVLDTEGSI
QNFFRKYAPSETGPYGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHIDFGYILGRDP
KPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVK
KVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAVVEQIHKFAQYWRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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