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Report for CCDS37688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37688.1 Public Mus musculus 17 Alk 23 108 98 CCDS HistoryNCBI Gene:11682Re-query CCDS DB by CCDS ID:37688.1Re-query CCDS DB by GeneID:11682See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086639.5 ENSMUSP00000083840.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086639.5Link to Ensembl Protein Viewer:ENSMUSP00000083840.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086639Re-query CCDS DB by Protein ID:ENSMUSP00000083840
Original member Current member NCBI NM_007439.2 NP_031465.2 Accepted alive Link to Nucleotide Sequence:NM_007439.2Link to Protein Sequence:NP_031465.2Re-query CCDS DB by Nucleotide ID:NM_007439Re-query CCDS DB by Protein ID:NP_031465Link to BLAST:NP_031465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031465.2 1621 P97793 1621 100% 0 0

Chromosomal Locations for CCDS 37688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71869442 71870131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71874118 71874208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71874942 71875076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71880795 71880896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71885355 71885447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71890965 71891062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71894076 71894205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71895712 71895776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71895877 71895967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71897805 71897991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71899170 71899274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71900660 71900812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71901298 71901396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71902621 71902803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71904240 71904384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71905048 71905179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71911482 71911632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71921853 71922015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71949810 71949938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71950177 71950271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71967486 71967655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71984631 71984731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71985424 71985555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71992059 71992190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72051740 72051867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72205797 72205998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72360558 72360722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72380045 72380161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72603028 72603709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4866 nt):
ATGGGAGCTGCTGGGTTCCTGTGGCTGCTGCCTCCACTGCTTTTGGCAGCAGCCTCGTACTCCGGAGCTG
CAACCGATCAGCGCGCGGGTTCCCCAGCCTCAGGGCCTCCTCTGCAGCCCCGGGAGCCGCTCAGTTATTC
GCGCCTGCAGAGGAAGAGTCTGGCAGTGGACTTCGTTGTACCCTCGCTCTTCCGCGTCTATGCCCGAGAC
CTGCTGCTACCGCAGCCACGGTCCCCCTCGGAGCCCGAGGCTGGCGGGCTGGAGGCGCGGGGATCACTGG
CCCTGGATTGTGAGCCTCTGCTCAGGCTGCTGGGGCCACTGCCTGGAATCTCCTGGGCAGATGGAGCCAG
TTCTCCTAGTCCCGAGGCGGGTCCGACGCTGTCCAGGGTGCTGAAGGGAGGCTCGGTGCGCAAGCTCAGG
CGTGCCAAACAGCTGGTGCTGGAGCTGGGCGAGGAGACGATTCTTGAAGGCTGTATTGGTCCCCCAGAGG
AGGTAGCGGCTGTGGGGATACTCCAGTTCAACCTCAGCGAGCTGTTCAGCTGGTGGATTCTCCACGGCGA
AGGGAGGCTGAGGATCCGCCTGATGCCTGAGAAGAAGGCATCGGAAGTGGGCAGGGAGGGAAGGCTATCC
AGTGCGATCCGAGCCTCCCAGCCCCGCCTTCTCTTCCAGATCTTCGGGACGGGACACAGCTCCATGGAGT
CACCCTCAGAAACGCCTTCTCCTCCTGGTACCTTCATGTGGAATCTGACCTGGACGATGAAAGACTCCTT
CCCTTTCCTTTCCCACCGCAGTCGATATGGTCTGGAGTGCAGCTTTGACTTCCCCTGTGAGCTGGAATAT
TCTCCTCCCCTGCACAACCACGGGAATCAGAGCTGGTCCTGGCGCCATGTGCCCTCCGAGGAGGCCTCGA
GGATGAACTTGCTGGATGGGCCAGAGGCAGAGCATTCTCAAGAGATGCCCAGAGGCTCCTTCCTCCTCCT
GAACACCTCTGCAGATTCCAAGCATACCATTCTGAGCCCATGGATGAGGAGCAGTAGTGATCACTGCACA
CTGGCTGTCTCCGTGCACAGACATCTACAGCCTTCGGGGAGATATGTTGCCCAGCTCCTACCCCACAACG
AAGCTGGAAGAGAGATTCTTTTGGTGCCCACCCCAGGGAAGCATGGCTGGACAGTGCTGCAGGGGAGAGT
CGGGCGCCCAGCAAACCCATTTCGAGTGGCTCTGGAATACATCTCCAGTGGCAACCGGAGCTTGTCGGCG
GTGGATTTCTTTGCCCTGAAGAACTGCAGTGAAGGGACATCCCCAGGCTCCAAGATGGCATTGCAGAGTT
CCTTCACTTGTTGGAATGGGACCGTCCTCCAGCTCGGGCAAGCCTGTGATTTCCACCAGGACTGTGCCCA
AGGAGAAGATGAGGGCCAGCTGTGCAGTAAACTTCCTGCTGGATTTTACTGTAACTTTGAAAATGGCTTC
TGTGGCTGGACCCAAAGTCCACTCTCACCCCATATGCCCCGGTGGCAAGTGAGGACCCTAAGAGATGCCC
ATTCCCAGGGCCACCAAGGCCGTGCCCTGTTGCTCAGCACCACTGACATCCTCGCTTCTGAAGGTGCAAC
AGTGACCAGTGCCACCTTCCCTGCACCAATGAAAAATTCTCCTTGTGAGCTCCGCATGTCCTGGCTCATC
CGCGGGGTTTTGAGAGGAAACGTATCTCTGGTGCTGGTGGAGAACAAAACCGGAAAGGAGCAAAGCCGGA
CTGTCTGGCATGTCGCCACTGACGAAGGCTTAAGCCTGTGGCAGCATACAGTGCTGTCCCTCCTCGATGT
GACTGACAGGTTCTGGCTGCAGATAGTCACATGGTGGGGTCCAGGATCCAGGGCAACCGTGGGATTTGAC
AACATTTCCATCAGCCTCGACTGCTACCTTACCATCAGTGGAGAGGAGAAAATGTCCCTGAATTCAGTAC
CCAAATCTAGAAATCTGTTTGAGAAAAACCCAAACAAGGAGTCAAAATCCTGGGCAAACATATCAGGACC
AACTCCCATCTTCGACCCTACAGTTCACTGGCTGTTCACCACGTGTGGGGCCAGTGGACCTCATGGCCCC
ACCCAGGCACAGTGCAACAACGCCTACCAGAATTCCAACTTGAGCGTGGTGGTGGGAAGTGAAGGGCCCT
TGAAGGGAGTCCAGATTTGGAAAGTGCCAGCTACTGACACCTACAGTATCTCGGGCTACGGAGCAGCTGG
CGGGAAAGGTGGGAAAAACACCATGATGCGGTCCCATGGCGTGTCTGTCCTGGGCATCTTCAATCTGGAG
AAAGGTGACACACTCTACATCCTTGTCGGTCAGCAAGGGGAGGATGCCTGTCCCAGGGCAAACCAACTAA
TCCAGAAAGTCTGTGTGGGTGAGAACAATGTCATAGAAGAAGAGATCCGAGTGAACAGAAGCGTGCACGA
GTGGGCAGGAGGAGGAGGAGGTGGGGGTGGAGCCACCTACGTGTTTAAGATGAAAGATGGCGTGCCTGTA
CCCCTGATCATTGCAGCTGGTGGTGGTGGCAGGGCCTATGGGGCCAAGACAGAAACGTTCCACCCAGAGA
GACTGGAGAGTAACTCCTCGGTTCTAGGGCTGAACGGCAATTCCGGAGCCGCAGGTGGTGGAGGCGGCTG
GAATGATAACACTTCCTTGCTCTGGGCCGGAAAGTCTTTGCTGGAGGGTGCCGCCGGAGGACATTCCTGC
CCCCAGGCCATGAAGAAGTGGGGGTGGGAGACAAGAGGGGGTTTCGGAGGGGGTGGAGGGGGGTGCTCCT
CAGGTGGAGGAGGCGGAGGATATATAGGTGGCAACGCAGCATCAAACAATGACCCCGAAATGGATGGGGA
AGATGGGGTTTCCTTCATCAGTCCATTGGGTATCCTGTACACCCCGGCCTTAAAAGTGATGGAGGGCCAC
GGGGAAGTGAATATCAAGCATTATCTAAACTGCAGTCACTGCGAGGTAGACGAATGTCACATGGACCCCG
AGAGCCACAAAGTCATCTGCTTCTGTGATCATGGGACCGTGCTGGCTGATGATGGTGTCTCCTGCATTGT
GTCACCCACCCCGGAGCCCCACCTGCCGCTCTCATTGATCCTCTCCGTCGTGACCTCTGCCCTGGTGGCT
GCCCTTGTTCTGGCATTCTCCGGCATCATGATTGTGTACCGTCGGAAGCACCAGGAGTTGCAGGCTATGC
AGATGGAACTGCAGAGCCCCGAGTATAAGCTGAGCAAGCTACGGACCTCGACCATCATGACCGACTACAA
CCCCAACTACTGCTTCGCTGGCAAGACTTCCTCCATCAGTGACCTGAAAGAAGTGCCACGGAAAAACATC
ACACTCATCCGGGGCCTAGGCCATGGCGCATTTGGGGAGGTGTATGAAGGCCAGGTGTCTGGAATGCCCA
ATGACCCAAGCCCTCTACAAGTGGCTGTAAAGACGCTGCCAGAAGTGTGTTCAGAACAAGATGAGCTGGA
CTTTCTCATGGAAGCTCTGATCATCAGCAAATTCAACCACCAGAATATTGTTCGCTGCATCGGGGTGAGT
CTACAAGCCCTGCCCCGCTTCATCCTGCTGGAACTCATGGCTGGCGGAGACCTCAAGTCCTTCCTCAGGG
AGACACGCCCTCGCCCGAACCAACCCACCTCCCTGGCCATGCTGGACCTTCTGCATGTGGCTCGGGACAT
TGCCTGTGGCTGTCAGTACCTAGAGGAGAATCACTTTATCCACCGGGATATTGCTGCTAGAAACTGTCTG
TTGACCTGCCCAGGAGCTGGAAGAATAGCAAAGATTGGAGACTTTGGGATGGCCCGAGATATCTACAGGG
CCAGCTACTACCGAAAGGGAGGCTGCGCCATGCTGCCGGTCAAGTGGATGCCCCCTGAAGCCTTCATGGA
AGGGATATTTACCTCTAAAACAGACACATGGTCTTTTGGAGTGTTGCTATGGGAAATATTTTCTCTTGGA
TATATGCCGTACCCCAGCAAGAGCAACCAGGAAGTTCTGGAGTTTGTCACCAGCGGAGGACGGATGGACC
CGCCTAAGAACTGCCCCGGGCCTGTATACCGGATAATGACGCAGTGCTGGCAGCATCAGCCTGAAGACAG
ACCCAACTTCGCCATCATTTTGGAGAGGATCGAATACTGCACCCAGGACCCCGATGTGATCAACACAGCT
CTGCCCATCGAATACGGTCCAGTAGTAGAAGAGGAGGAGAAAGTGCCCATGCGCCCCAAAGACCCCGAGG
GGATGCCACCTTTGCTGGTGTCTCCCCAGCCTGCGAAGCACGAGGAGGCGTCCGCAGCTCCCCAGCCCGC
AGCCCTGACGGCACCAGGCCCATCGGTGAAGAAGCCCCCGGGTGCGGGTGCGGGCGCGGGCGCGGGTGCG
GGTGCCGGCCCGGTGCCCCGAGGTGCGGCCGATCGGGGCCACGTGAACATGGCTTTCTCTCAGCCCAACC
CTCCCCCGGAGCTGCACAAAGGCCCGGGATCCAGAAACAAGCCGACCAGCCTGTGGAACCCCACCTACGG
CTCGTGGTTCACCGAGAAGCCTGCCAAAAAGACCCATCCTCCGCCAGGCGCCGAGCCGCAGGCGCGGGCA
GGAGCGGCCGAGGGTGGCTGGACCGGGCCGGGCGCGGGGCCCCGCAGAGCCGAGGCAGCGCTGCTGCTAG
AGCCATCGGCGCTGAGCGCCACCATGAAGGAGGTGCCGCTGTTCAGGCTGCGCCACTTCCCCTGCGGCAA
TGTCAACTATGGTTACCAGCAACAGGGTCTCCCCTTGGAAGCCACAGCCGCGCCAGGGGACACCATGCTG
AAAAGCAAGAATAAGGTCACCCAGCCGGGGCCCTGA

Translation (1621 aa):
MGAAGFLWLLPPLLLAAASYSGAATDQRAGSPASGPPLQPREPLSYSRLQRKSLAVDFVVPSLFRVYARD
LLLPQPRSPSEPEAGGLEARGSLALDCEPLLRLLGPLPGISWADGASSPSPEAGPTLSRVLKGGSVRKLR
RAKQLVLELGEETILEGCIGPPEEVAAVGILQFNLSELFSWWILHGEGRLRIRLMPEKKASEVGREGRLS
SAIRASQPRLLFQIFGTGHSSMESPSETPSPPGTFMWNLTWTMKDSFPFLSHRSRYGLECSFDFPCELEY
SPPLHNHGNQSWSWRHVPSEEASRMNLLDGPEAEHSQEMPRGSFLLLNTSADSKHTILSPWMRSSSDHCT
LAVSVHRHLQPSGRYVAQLLPHNEAGREILLVPTPGKHGWTVLQGRVGRPANPFRVALEYISSGNRSLSA
VDFFALKNCSEGTSPGSKMALQSSFTCWNGTVLQLGQACDFHQDCAQGEDEGQLCSKLPAGFYCNFENGF
CGWTQSPLSPHMPRWQVRTLRDAHSQGHQGRALLLSTTDILASEGATVTSATFPAPMKNSPCELRMSWLI
RGVLRGNVSLVLVENKTGKEQSRTVWHVATDEGLSLWQHTVLSLLDVTDRFWLQIVTWWGPGSRATVGFD
NISISLDCYLTISGEEKMSLNSVPKSRNLFEKNPNKESKSWANISGPTPIFDPTVHWLFTTCGASGPHGP
TQAQCNNAYQNSNLSVVVGSEGPLKGVQIWKVPATDTYSISGYGAAGGKGGKNTMMRSHGVSVLGIFNLE
KGDTLYILVGQQGEDACPRANQLIQKVCVGENNVIEEEIRVNRSVHEWAGGGGGGGGATYVFKMKDGVPV
PLIIAAGGGGRAYGAKTETFHPERLESNSSVLGLNGNSGAAGGGGGWNDNTSLLWAGKSLLEGAAGGHSC
PQAMKKWGWETRGGFGGGGGGCSSGGGGGGYIGGNAASNNDPEMDGEDGVSFISPLGILYTPALKVMEGH
GEVNIKHYLNCSHCEVDECHMDPESHKVICFCDHGTVLADDGVSCIVSPTPEPHLPLSLILSVVTSALVA
ALVLAFSGIMIVYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNI
TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS
LQALPRFILLELMAGGDLKSFLRETRPRPNQPTSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCL
LTCPGAGRIAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLG
YMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTA
LPIEYGPVVEEEEKVPMRPKDPEGMPPLLVSPQPAKHEEASAAPQPAALTAPGPSVKKPPGAGAGAGAGA
GAGPVPRGAADRGHVNMAFSQPNPPPELHKGPGSRNKPTSLWNPTYGSWFTEKPAKKTHPPPGAEPQARA
GAAEGGWTGPGAGPRRAEAALLLEPSALSATMKEVPLFRLRHFPCGNVNYGYQQQGLPLEATAAPGDTML
KSKNKVTQPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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