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Report for CCDS37662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37662.1 Public Mus musculus 17 Plin5 23 108 98 CCDS HistoryNCBI Gene:66968Re-query CCDS DB by CCDS ID:37662.1Re-query CCDS DB by GeneID:66968See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019808.11 ENSMUSP00000019808.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019808.11Link to Ensembl Protein Viewer:ENSMUSP00000019808.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019808Re-query CCDS DB by Protein ID:ENSMUSP00000019808
Original member Current member EBI ENSMUST00000113072.2 ENSMUSP00000108695.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113072.2Link to Ensembl Protein Viewer:ENSMUSP00000108695.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113072Re-query CCDS DB by Protein ID:ENSMUSP00000108695
Original member Current member NCBI NM_001077348.1 NP_001070816.1 Accepted alive Link to Nucleotide Sequence:NM_001077348.1Link to Protein Sequence:NP_001070816.1Re-query CCDS DB by Nucleotide ID:NM_001077348Re-query CCDS DB by Protein ID:NP_001070816Link to BLAST:NP_001070816.1
Original member Current member NCBI NM_025874.3 NP_080150.2 Accepted alive Link to Nucleotide Sequence:NM_025874.3Link to Protein Sequence:NP_080150.2Re-query CCDS DB by Nucleotide ID:NM_025874Re-query CCDS DB by Protein ID:NP_080150Link to BLAST:NP_080150.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070816.1 463 Q8BVZ1-1 463 100% 0 0
NP_080150.2 463 Q8BVZ1-1 463 100% 0 0

Chromosomal Locations for CCDS 37662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56112029 56112541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56112870 56112983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56113899 56114098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56115093 56115273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56115551 56115633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56116258 56116453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56116829 56116889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56117083 56117126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGACCAGAGAGGTGAAGACACCACCCTAGCGCCACACAGCAGAATGTCCGGTGATCAGACAGCTCAGG
ACCCTGGATCCAGCCTGGGAGAACTGGACCAGCAGAATGTGGTGAATCGAGTGGTGGCTTTGCCCCTGGT
CAAGGCCACGTGCACTGCCGTGTCCAGTGCTTACAACTCGGCCAAGGACAGGCACCCGCTGCTGGGCTCC
GCCTGCCGCCTTGCTGAGCACTGTGTGTGTAGTGTGACTACCTGTGCCCTGGACCACGCACAGCCACTGC
TGGAGCACCTGCAGCCCCAGTTGGCCACAGTGAATGATCTTGCCTGCAGGGGACTAGACAAATTGGAAGA
GAAGCTGCCCTTCCTGCAGCAGCCATCAGACATGGTGGTGACATCAGCCAAGGATACAGTGGCCAAAAGT
GTCACAGGCATGGTGGACCTGGCCCAAAGGGGCCGGCGTTGGAGTGGGGAGCTGAGGCGCTCCATGAGTC
AAGCCATGGACATGGTGCTGGGCAAGTCGGAGAAGCTGGTGGACCGCTTCCTGCCCATGACTGAGGCTGA
GCTAGCAGTCCTGGCAGCTGAGGCCGAGGGCCCAGAAGTGGGCACAGTGGAGGAGCAGAGGCAGCAACAG
GGCTACTTTGTGCGTCTGGGGTCCCTATCGGCACGCCTCCGCCATCTCGCCTATGAACACTCTTTGGGGA
AACTGAGGCAGAGCAAACACCGTACCCAGGAGATGCTGGCCCAGCTGCAGGAAACGCTGGAGCTGATCCA
GCATATGCAGAGAGGGGCAAGCCCTAGCCCTACTTTCCATCCCCCAAAGACTCAGGAGCTGTGGGGGAGC
TGGAGCCCGTGTCTAGAGAATGGCCGCAGCCACAGTGAGGTGGAGCTGGAGACACTGGCTCTGTCTCGAA
GTTTGACCCTGGAGCTGCAGAATGCAGTGGATGCCCTGGCAGGCTGTGTTCGGGGCCTGCCACCTAGTGC
CCAGGCCAAGGTGGCTGAGGTGCAGCGCAGCGTGGATGCTCTACAGGCCACCTTTGCTGATGCACACTGC
CTTGGTGATGTGGCACCCACTGCTCTGGCTGAGGGCCGGGGCAGTGTGGCCCGGGCACATGCCTGTGTGG
ATGAGTTCCTGGATTTGGTCCTGCGGGCCATGCCACTGCCCTGGCTTGTGGGGCCCTTTGCACCCATCCT
GGTGGAACAGTCGGAGCCCCTGATCAACCTGGCCACCTGTGTGGACGAGGTGGTGGGTGACCCTGATCCT
CGCTGGGCACACATGGACTGGCCAGCCCAGAAGAGGGCCTGGGAGGCTGAGTCTGCAGATCCTGGGGGGC
AAGAGGCTGAGCCCCCAAGGGGGCAAGGCAAGCACACAATGATGCCAGAGCTGGACTTCTGA

Translation (463 aa):
MDQRGEDTTLAPHSRMSGDQTAQDPGSSLGELDQQNVVNRVVALPLVKATCTAVSSAYNSAKDRHPLLGS
ACRLAEHCVCSVTTCALDHAQPLLEHLQPQLATVNDLACRGLDKLEEKLPFLQQPSDMVVTSAKDTVAKS
VTGMVDLAQRGRRWSGELRRSMSQAMDMVLGKSEKLVDRFLPMTEAELAVLAAEAEGPEVGTVEEQRQQQ
GYFVRLGSLSARLRHLAYEHSLGKLRQSKHRTQEMLAQLQETLELIQHMQRGASPSPTFHPPKTQELWGS
WSPCLENGRSHSEVELETLALSRSLTLELQNAVDALAGCVRGLPPSAQAKVAEVQRSVDALQATFADAHC
LGDVAPTALAEGRGSVARAHACVDEFLDLVLRAMPLPWLVGPFAPILVEQSEPLINLATCVDEVVGDPDP
RWAHMDWPAQKRAWEAESADPGGQEAEPPRGQGKHTMMPELDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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