NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37632.1 Public Mus musculus 17 Polr1c 23 108 98 CCDS HistoryNCBI Gene:20016Re-query CCDS DB by CCDS ID:37632.1Re-query CCDS DB by GeneID:20016See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087026.12 ENSMUSP00000084252.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087026.12Link to Ensembl Protein Viewer:ENSMUSP00000084252.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087026Re-query CCDS DB by Protein ID:ENSMUSP00000084252
Original member Current member NCBI NM_009085.2 NP_033111.2 Accepted alive Link to Nucleotide Sequence:NM_009085.2Link to Protein Sequence:NP_033111.2Re-query CCDS DB by Nucleotide ID:NM_009085Re-query CCDS DB by Protein ID:NP_033111Link to BLAST:NP_033111.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033111.2 346 P52432 346 100% 0 0

Chromosomal Locations for CCDS 37632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46244102 46244220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46244306 46244422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46244526 46244675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46244799 46244951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46245031 46245150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46245616 46245748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46246107 46246214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46247729 46247800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46247895 46247963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCGGCGGCTCAGGCGGTGGAGGAGATGCGGACTCGCGTGGTTCTCGGAGAGTTTGGGGTTCGCAATG
TCCACACCACGGACTTTCCCGGTAACTACGCCGGTTATGATGATGCCTGGGACCAGAACCGCTTCGAGAA
GAATTTCCGTGTGGACGTGGTGCAAATGGATGAAGACACGCTGGAGTTCGACATGGTGGGGATTGATGCT
GCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGTGCCGACAATGGCCGTGGAGAAGGTCTTGG
TGTATAACAACACGTCCATAGTCCAGGATGAGATCCTTGCTCACCGCCTGGGGCTCATCCCCATCCTCGC
TGATCCTCGTCTCTTTGAATATCGGAACCAAGGAGAGGAGGAAGGAACAGAGATAGACACGCTGCAGTTC
CGGCTGCAGGTCAGGTGTACCAGGAACCCCAATGCTGCCAAGGATTCCTCAGACCCCAATGAACTCTATG
TCAACCATAAAGTCTACACCAGGCATATGACATGGGTCCCCTTGGGAAATCAGGCTGATGTCTTCCCAGA
GGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAAATTGACTTG
ATGATGCATTGCGTCAAGGGCATTGGCAAAGACCATGCCAAGTTCTCACCAGTGGCCACAGCCAGCTACA
GACTGCTACCGGCCATCACTCTGCTTGAGCCTGTGGAAGGAGAAGCGGCTGAGGAGCTGAGCCAGTGTTT
CTCCCCTGGCGTGATTGAGGTGGAGGAAGTACAAGGTAAAAAGGTGGCCAGGGTGGCCAATGCTCGGCTG
GATACCTTCAGCAGGGAAATCTTCCGGCATGAGAAACTCAAGAAGGCTGTGCGGCTTGCCCGGGTTCGGG
ACCATTATATCTTTTCTGTGGAGTCTACTGGAGTTTTGCCACCAGATGTGTTGGTGAGTGAAGCCATCAA
GATCCTGATGGGGAAGTGCCGGCGGTTCTTGGATGAACTGGATGCAGTTGAGATGGACTGA

Translation (346 aa):
MAAAQAVEEMRTRVVLGEFGVRNVHTTDFPGNYAGYDDAWDQNRFEKNFRVDVVQMDEDTLEFDMVGIDA
AIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQF
RLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDL
MMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANARL
DTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDELDAVEMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH