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Report for CCDS37572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37572.1 Public Mus musculus 17 Tapbp 23 108 98 CCDS HistoryNCBI Gene:21356Re-query CCDS DB by CCDS ID:37572.1Re-query CCDS DB by GeneID:21356See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025161.9 ENSMUSP00000025161.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025161.9Link to Ensembl Protein Viewer:ENSMUSP00000025161.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025161Re-query CCDS DB by Protein ID:ENSMUSP00000025161
Original member Current member NCBI NM_001025313.1 NP_001020484.1 Accepted alive Link to Nucleotide Sequence:NM_001025313.1Link to Protein Sequence:NP_001020484.1Re-query CCDS DB by Nucleotide ID:NM_001025313Re-query CCDS DB by Protein ID:NP_001020484Link to BLAST:NP_001020484.1

Chromosomal Locations for CCDS 37572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33919688 33919724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33919871 33920050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33920249 33920509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33925410 33925808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926008 33926349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926428 33926517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33926627 33926706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33928140 33928151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGAAGCCTCTGCTCCTGCTCGTCGCTGTGGCACTGGGCCTAGCGACCGTCGTCTCCGTCGTCTCGGCTG
GACCAGAGGCGATCGAGTGCTGGTTCGTGGAGGATGCAGGTGGGGGTGGCCTGTCTAAGAAACCTGCCAC
ACTGCTACTGCGCCATGGACCCAGGGGACCGCCGCCCCGGCCAGATCTTGACCCAAAGCTATACTTCAAG
GTGGATGACCCGGCGGGAATGCTCCTGGCCGCCTTCAGGCGGTACCCCGCAGGCGCCTCCGCCCCACACT
GCGAGATGAGCCGCTTCATCCCGTTCCCTGCCTCGGCGAAGTGGGCTAGAAGTCTGAGTCCGGAGCAGAA
CTGCCCGCGGGCCCTGGACGGGGATTGGCTGCTGGTCAGCGTATCCAGCACTCTCTTCAGCCTCTCCAGC
CTGCTGCGACCACAGCCGGAGCCTCTGCGGGAGCCTGTCGTCATCACCATGGCAACAGTGGTGCTGACCG
TCCTCACCCATAACCCTGCCCCTCGAGTCCAGCTGGGAAAGGATGCAGTGCTGGACCTGCGCTTCGCCTA
CGCACCCTCCGCCCTGGAAGGTTCTCCCTCTCTGGACGCAGGCCCTCCTCCCTTTGGGCTGGAGTGGCGA
CGCCAGCACAGGGGAAAGGGTCACCTGCTGTTGGCTGCCACCCCCGGGCTGGCCGGGAGAATGCCACCAG
CCCAGGAAAAGGCTACGGCATTTGCAGCTTGGGATGACGATGAGCCCTGGGGCCCGTGGACTGGGAATGG
GACCTTCTGGCTTCCAGCCGTGAAGCCTTCTCAGGAGGGTGTCTACCTGGCTACGGTACACCTGCCCTAC
CTGCAAGGACAGGTCTCCCTGGAGCTGACTGTGCACAAGGCCCCCAGAGTGTCTCTAACACCAGCACCCG
TTGTGTGGGCTGCCCCAGGAGAGGCACCCCCAGAACTGCTCTGTCTTGCATCCCACTTCTTCCCTGCGGA
GGGTCTGGAGGTCAAGTGGGAGCTCAGAGGCGGCCCAGGAGGAAGTTCTAGAAAGGTTGAGGGGAAGACG
TGGCTCTCCACCATCCGCCACCATTCCGATGGCTCTGTCAGCCAGTCTGGGCACCTGCAGCTACCTCCAG
TCACTGCCAAGCAGCATGGAGTTCACTATGTCTGTCGGGTGTACCACTCTAGCCTGCCAGCATCGGGGCG
CAGTGCTGACGTCACCCTGGAGGTGGCAGGCTTCTCAGGGCCCTCCATCGAGGACGGCATCGGCCTGTTC
CTGTCTGCTTTTCTCCTCCTCGGACTCCTCAAGGTGCTAGGCTGGCTGGTAGCTGCCTACTGGACCATTC
CTGAAGTCTCAAAGGAGAAGGCCACAGCTGCCAGCCTGACCATTCCCAGGAACTCAAAGAAGTCACAGTA
A

Translation (466 aa):
MKPLLLLVAVALGLATVVSVVSAGPEAIECWFVEDAGGGGLSKKPATLLLRHGPRGPPPRPDLDPKLYFK
VDDPAGMLLAAFRRYPAGASAPHCEMSRFIPFPASAKWARSLSPEQNCPRALDGDWLLVSVSSTLFSLSS
LLRPQPEPLREPVVITMATVVLTVLTHNPAPRVQLGKDAVLDLRFAYAPSALEGSPSLDAGPPPFGLEWR
RQHRGKGHLLLAATPGLAGRMPPAQEKATAFAAWDDDEPWGPWTGNGTFWLPAVKPSQEGVYLATVHLPY
LQGQVSLELTVHKAPRVSLTPAPVVWAAPGEAPPELLCLASHFFPAEGLEVKWELRGGPGGSSRKVEGKT
WLSTIRHHSDGSVSQSGHLQLPPVTAKQHGVHYVCRVYHSSLPASGRSADVTLEVAGFSGPSIEDGIGLF
LSAFLLLGLLKVLGWLVAAYWTIPEVSKEKATAASLTIPRNSKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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