NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37565.1 Public Mus musculus 17 Zfp101 23 108 98 CCDS HistoryNCBI Gene:22643Re-query CCDS DB by CCDS ID:37565.1Re-query CCDS DB by GeneID:22643See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167107.9 ENSMUSP00000132508.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167107.9Link to Ensembl Protein Viewer:ENSMUSP00000132508.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167107Re-query CCDS DB by Protein ID:ENSMUSP00000132508
Original member NCBI NM_009542.2 NP_033568.2 Updated not alive Link to Nucleotide Sequence:NM_009542.2Link to Protein Sequence:NP_033568.2Re-query CCDS DB by Nucleotide ID:NM_009542Re-query CCDS DB by Protein ID:NP_033568
Current member NCBI NM_009542.3 NP_033568.2 Accepted alive Link to Nucleotide Sequence:NM_009542.3Link to Protein Sequence:NP_033568.2Re-query CCDS DB by Nucleotide ID:NM_009542Re-query CCDS DB by Protein ID:NP_033568Link to BLAST:NP_033568.2

Chromosomal Locations for CCDS 37565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33380942 33382586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33386422 33386467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33386685 33386811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33394488 33394508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGCGTCCGAAGCTGGAAATGGAACCAGTGACCTTTGAGGATGTGGCTGTGAACTTCACCTCAGGAGAGT
GGACTTTGTTGGATTCCAGTCAAAAGAAGCTCTACAGAGATGTGATGAAGGAAAACTTTTTGAACCTGAT
CTCCATAGAGAAAACACGAGAAGAAAATGTTGAAGAGGACTACCAAAATCTCAGAACTCAAGTGATTGAG
AAAGATGGTGAATGTGAACGTGGTTGTCAATGTGAACAAACCCAGGCACAGAGTCCGGAGTATATTGTTA
ATGAGGACATGCCTCCTGCAGCAACAGGATGTGGAAGCAGTTTGTATGTGAGAAACGTCATTGGTAATTC
ACCCTGGGATGTGCACCTCAGTGGTCAAACTCAAGAGAAACCATTTGAGTGTAAGGAACCTGTGGAGAAG
GCTTTTAAACCTGAGGAATGCTGGGAAGATATGGGTCATTCTAAGGCATTTCAGGTTCATGGAAGTTCTC
GAGAGAAATCCTATGAAAATCAGCAATGTGATGCAGCTCATAGAAACCTCCATTGTGATCCGCATCATGA
GAGAACGCATGATGGAAATAAAAACAATGAGAATACCTTTATGAAGTGTACATCTGACCAGATCGATGAA
AAACTCCACAGTGAAGTAAAGCCATTTGTGTGTAAGCAGTGTGGAGAAGCCTTTGTTAATTCCAGTCACC
TTATCAGTCATGAGCGAATTCATATTGTAGAAAAGTGTTATATTTGCAAACAGTGTGGGAAAACATTTAG
ATATTTGTCATGCTTCCAAAAACATGAAAGAATTCACAGTGGAGAGAGGCCTTATGTGTGTGAGCAATGT
GGGAAAGGATTTATTCAGTTGAAATACCTTCTCATGCACCAAAGGAGTCATGGAGAGAATTCTTATGAAT
GTAAACATTGTGAAAAAGTCTTCACTATTTCCAGTGTCCATAATGTTCATGAAGATATTCAAGATGGAGA
CAAGCCATATTCATGCACACATTGTGGGAAAGCTTTCTCTAGTCCCAGTGACTATAATAGTTGTGAAAGA
ATTCACACTGGAGAGAATCCCTTTGTATGTAAGAAATGTGGGAAAGCCTTCAAACGTTTGGGGCATTTTA
TGAATCATGAAAGGATTCACACTGGAGAGAAGCCTTATGCCTGCAAACATTGTGGAAAAGCCTTCACCAG
TTCCAGTGACCGGAACAGTCATGAAAGAATTCACACTGGAGAGAAACCCTTTGTCTGTAAAACCTGTGGG
AAAGCCTTCAGTCGTTCTGATTATCTTATCAATCATAAAAGGATTCATACCGGAGAGAAGCCTTATCCGT
GTAAGTATTGTGGGAAAGCCTTTGCCACTTCCAGTGACAGAAACAGTCATGAAAGAATTCATACTGGTGA
GAGATCCTTTCTGTGTAAAAAATGTGGGAAAGTGTTCATTCTTTCTGGTGATCTAATCAAGCACGAGAGG
ATTCACACTGGAGAGAAGCCTTATGCCTGCAAACATTGTGGAAAAGCTTTCACTACTTCAAGTGCCCGCA
ACAGTCATGAAAGAATTCACACTGGAGAGAAGCCGTATACATGTAAGCATTGCACAAAAACTTTTACCAC
TTCCAGTACCCGTAACAGTCATGAAAAAACTCACACTGCAGAGAAGCATTTTGCGTGTAACCTTTGTGGG
AAAACCTTCAACAGTCAGAGTTCCTATTACACTCATAAAAAAATACACTCTATGAAAGAGAAACTTTATG
TATGTAAACACTGTGGGAAAGAATTCACTTACTGTGGTAATTTCCTTAAGCATGAAAGAAGTCACACCAT
GGAAACATTATCCATATGA

Translation (612 aa):
MRPKLEMEPVTFEDVAVNFTSGEWTLLDSSQKKLYRDVMKENFLNLISIEKTREENVEEDYQNLRTQVIE
KDGECERGCQCEQTQAQSPEYIVNEDMPPAATGCGSSLYVRNVIGNSPWDVHLSGQTQEKPFECKEPVEK
AFKPEECWEDMGHSKAFQVHGSSREKSYENQQCDAAHRNLHCDPHHERTHDGNKNNENTFMKCTSDQIDE
KLHSEVKPFVCKQCGEAFVNSSHLISHERIHIVEKCYICKQCGKTFRYLSCFQKHERIHSGERPYVCEQC
GKGFIQLKYLLMHQRSHGENSYECKHCEKVFTISSVHNVHEDIQDGDKPYSCTHCGKAFSSPSDYNSCER
IHTGENPFVCKKCGKAFKRLGHFMNHERIHTGEKPYACKHCGKAFTSSSDRNSHERIHTGEKPFVCKTCG
KAFSRSDYLINHKRIHTGEKPYPCKYCGKAFATSSDRNSHERIHTGERSFLCKKCGKVFILSGDLIKHER
IHTGEKPYACKHCGKAFTTSSARNSHERIHTGEKPYTCKHCTKTFTTSSTRNSHEKTHTAEKHFACNLCG
KTFNSQSSYYTHKKIHSMKEKLYVCKHCGKEFTYCGNFLKHERSHTMETLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH