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Report for CCDS37552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37552.1 Public Mus musculus 17 Sik1 23 108 98 CCDS HistoryNCBI Gene:17691Re-query CCDS DB by CCDS ID:37552.1Re-query CCDS DB by GeneID:17691See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024839.5 ENSMUSP00000024839.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024839.5Link to Ensembl Protein Viewer:ENSMUSP00000024839.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024839Re-query CCDS DB by Protein ID:ENSMUSP00000024839
Original member Current member NCBI NM_010831.3 NP_034961.2 Accepted alive Link to Nucleotide Sequence:NM_010831.3Link to Protein Sequence:NP_034961.2Re-query CCDS DB by Nucleotide ID:NM_010831Re-query CCDS DB by Protein ID:NP_034961Link to BLAST:NP_034961.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034961.2 779 Q60670 779 100% 0 0

Chromosomal Locations for CCDS 37552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31846283 31846643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31847033 31847261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31847895 31848176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31848632 31848848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31848959 31849081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31849519 31849674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31849928 31850151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31850726 31850849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31850941 31851065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31851235 31851396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31851533 31851596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31854208 31854324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31854894 31855049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGTGATCATGTCGGAGTTCAGTGCGGTCCCCTCAGGCACTGGCCAGGGCCAGCAGAAGCCCCTCCGGG
TGGGCTTTTACGACGTGGAACGGACCCTGGGCAAAGGCAATTTTGCAGTGGTTAAGCTGGCGCGGCACCG
AGTCACCAAAACGCAGGTTGCAATAAAAATAATTGACAAGACACGGTTAGATTCTAGCAATCTGGAGAAG
ATCTACCGGGAGGTCCAGCTCATGAAACTTTTGAACCACCCAAATATCATCAAGCTTTATCAGGTTATGG
AGACAAAGGATATGCTCTACATTGTCACAGAATTTGCAAAAAATGGAGAAATGTTTGATTATCTGACTTC
CAACGGGCACTTGAGTGAAAACGAGGCTAGGCAGAAGTTCTGGCAGATTCTGTCAGCCGTGGAGTACTGC
CACAACCACCACATTGTCCACCGGGACCTCAAGACGGAGAACCTGCTCCTGGACAGCAACATGGATATCA
AGCTAGCAGATTTTGGATTTGGGAATTTCTACAAGCCAGGCGAGCCTCTGTCCACGTGGTGTGGGAGCCC
CCCGTATGCAGCCCCTGAAGTCTTCGAGGGGAAGGAGTACGAGGGTCCCCAGCTGGACGTCTGGAGCCTC
GGTGTGGTGCTGTACGTCCTGGTCTGTGGCTCCCTCCCCTTCGACGGGCCCAACCTGCCTACGCTGAGAC
AGCGGGTACTGGAGGGCCGCTTCCGCATCCCCTTCTTCATGTCTCAAGACTGTGAGACGCTGATCAGACG
CATGCTGGTCGTGGACCCCGCTAAGCGCATCACCATAGCCCAGATCCGCCAGCACCGGTGGATGCAGGCC
GACCCCACTCTCCTGCAGCAGGATGACCCTGCCTTCGACATGCAAGGCTACACCTCCAACCTGGGCGACT
ACAACGAACAGGTGCTAGGGATCATGCAGGCCCTCGGCATCGACCGGCAGCGGACTATAGAGTCTCTGCA
GAACAGCAGCTACAACCACTTTGCCGCCATTTACTACCTCCTACTCGAGCGCCTCAAGGAGCATCGAAGC
GCCCAGCCCTCATCCCGGCCCACCCCTGCACCCACCAGACAGCCCCAGCTCCGAAGCTCAGACCTCAGCA
GTCTGGAGGTTCCTCAAGAAATTCTCCCGTGTGACCCTTTCCGGCCCTCTCTGCTGTGCCCACAGCCCCA
GGCCTTGGCTCAGTCTGTCCTGCAGGCTGAGATAGACTGTGATCTCCACAGCTCACTTCAGCCCTTATTA
TTCCCCCTGGATACCAACTGCAGTGGAGTGTTCCGGCACCGATCCATCTCCCCCAGCAGTCTGCTGGACA
CAGCTATCAGCGAGGAGGCCAGGCAGGGTCCCAGCCTAGAGGAGGAACAGGAGGTCCAGGAACCCCTGCC
CGGAAGCACAGGCCGGAGGCACACATTGGCTGAAGTCTCCACCCATTTCTCCCCGCTCAACCCTCCTTGC
ATAATTGTCTCCTCCTCTGCCACGGCGAGTCCCTCGGAAGGGACCAGCTCCGACAGCTGCCTCCCCTTCT
CTGCAAGTGAAGGTCCTGCAGGGCTTGGCAGTGGCCTGGCCACCCCAGGGCTGCTGGGCACCAGCTCTCC
AGTCAGATTGGCCTCGCCCTTCCTGGGATCACAGTCAGCCACCCCTGTGCTCCAGACTCAGGCAGGTCTG
GGCACAGCCGTCTTACCTCCCGTCAGCTTCCAGGAGGGACGGAGAGCGTCTGATACCTCTCTCACTCAGG
GGCTGAAGGCCTTCCGGCAGCAGCTGAGGAAAAATGCGAGGACCAAGGGGTTCCTGGGACTGAACAAGAT
CAAAGGGTTGGCTCGCCAGGTGTGCCAGTCCTCCGTCCGAACTCCCCGGGGAGGGATGAGTACCTTCCAC
ACCCCAGCCCCAAGCTCCGGCCTGCAAGGCTGCACGACCAGCAATCGGGAGGGCAGGAGCCTACTTGAAG
AGGTCCTGCACCAGCAGAGGCTGCTCCAGTTACAGCACCACTCTTCTACCGCCGCCGCCTCATCTGGCTG
CCAGCAGGGCCCCCAGCTGTCCCCGGTCCCCTATGTGCTTGCTCCCTGTGACAGCCTCCTCGTGTCTGGA
ATTCCACTGCTGCCAACACCCCTTCTCCAGGCTGGCATGTCCCCTGTGGCGTCTGCTGCGCATCTCCTGG
ATACCCACTTGCACATCAGTGCTGGCCCAGTGGCCCTCCCCACTGGGCCCCTGCCACAGTGCCTCACCAG
GCTGTCCCCAGGCTGTGATCCAGCTGGGCTGCCACAGGGGGACTGTGAGATGGAGGACCTGACCTCTGGC
CAGCGGGGGACATTCGTCCTGGTACAGTGA

Translation (779 aa):
MVIMSEFSAVPSGTGQGQQKPLRVGFYDVERTLGKGNFAVVKLARHRVTKTQVAIKIIDKTRLDSSNLEK
IYREVQLMKLLNHPNIIKLYQVMETKDMLYIVTEFAKNGEMFDYLTSNGHLSENEARQKFWQILSAVEYC
HNHHIVHRDLKTENLLLDSNMDIKLADFGFGNFYKPGEPLSTWCGSPPYAAPEVFEGKEYEGPQLDVWSL
GVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPFFMSQDCETLIRRMLVVDPAKRITIAQIRQHRWMQA
DPTLLQQDDPAFDMQGYTSNLGDYNEQVLGIMQALGIDRQRTIESLQNSSYNHFAAIYYLLLERLKEHRS
AQPSSRPTPAPTRQPQLRSSDLSSLEVPQEILPCDPFRPSLLCPQPQALAQSVLQAEIDCDLHSSLQPLL
FPLDTNCSGVFRHRSISPSSLLDTAISEEARQGPSLEEEQEVQEPLPGSTGRRHTLAEVSTHFSPLNPPC
IIVSSSATASPSEGTSSDSCLPFSASEGPAGLGSGLATPGLLGTSSPVRLASPFLGSQSATPVLQTQAGL
GTAVLPPVSFQEGRRASDTSLTQGLKAFRQQLRKNARTKGFLGLNKIKGLARQVCQSSVRTPRGGMSTFH
TPAPSSGLQGCTTSNREGRSLLEEVLHQQRLLQLQHHSSTAAASSGCQQGPQLSPVPYVLAPCDSLLVSG
IPLLPTPLLQAGMSPVASAAHLLDTHLHISAGPVALPTGPLPQCLTRLSPGCDPAGLPQGDCEMEDLTSG
QRGTFVLVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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