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Report for CCDS37489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37489.1 Public Mus musculus 17 Dnase1l2 23 108 98 CCDS HistoryNCBI Gene:66705Re-query CCDS DB by CCDS ID:37489.1Re-query CCDS DB by GeneID:66705See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088506.11 ENSMUSP00000085862.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088506.11Link to Ensembl Protein Viewer:ENSMUSP00000085862.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088506Re-query CCDS DB by Protein ID:ENSMUSP00000085862
Original member Current member EBI ENSMUST00000119932.7 ENSMUSP00000113508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119932.7Link to Ensembl Protein Viewer:ENSMUSP00000113508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119932Re-query CCDS DB by Protein ID:ENSMUSP00000113508
Original member NCBI NM_025718.3 NP_079994.2 Updated not alive Link to Nucleotide Sequence:NM_025718.3Link to Protein Sequence:NP_079994.2Re-query CCDS DB by Nucleotide ID:NM_025718Re-query CCDS DB by Protein ID:NP_079994
Current member NCBI NM_025718.4 NP_079994.2 Accepted alive Link to Nucleotide Sequence:NM_025718.4Link to Protein Sequence:NP_079994.2Re-query CCDS DB by Nucleotide ID:NM_025718Re-query CCDS DB by Protein ID:NP_079994Link to BLAST:NP_079994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079994.2 278 Q9D1G0 278 100% 0 0

Chromosomal Locations for CCDS 37489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24441056 24441109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24441496 24441747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24441858 24441970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24442052 24442152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24442233 24442316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24442405 24442493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24442640 24442783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGGTTGGCCCTGGGCCCCGCTGACAGCAGTTTGGGCACTGGGGGTCATGGGAGCCACAGCGCTGCGGA
TTGGAGCCTTCAATGTTCAGAGCTTTGGAGACAACAAAGTGTCAGATCCAGACTGTGGCAGTGTCATAGC
ACAGATCCTGGCCGGCTATGATATCGCCCTGGTGCAAGAGGTACGAGACCCAGACCTAAGTGCAGTGTCC
TTGCTCATGGAGCAAATTAACAGAGTGTCCAAGCACGAGTACGGCTTTGTGAGCAGCAAGCCACTCGGAC
GTGACCAGTACAAGGAAATGTACCTGTTTGTTTACAGGAAAGATGTAGCGTCAGTGGTGAGCACGTACCA
GTATCCAGACCCAGAGGACGCTTTCAGCCGGGAGCCTTTTGTGGTCAAATTCTCAGTTCCTAGCTGTGCC
ACCAAGGAGCTGGTGCTGATCCCCCTCCATGCAGCACCACACCAGGCGGTGGCAGAGATCGACGCGCTCT
ACGATGTGTACCTTGATGTCATTGACAAGTGGAACACTGATGACATGCTGTTTCTGGGTGACTTTAATGC
CGATTGCAAGTACGTGAAGGCGCATGACTGGCCATCGATCCGCCTTCGAAGCAGTGAGGTGTTTAAATGG
CTCATCCCAGACAGTGCGGACACCACAGTGGGCAACTCAGACTGTGCCTATGACCGGATTGTAGTGAGTG
GCGCCCATCTGCGCAGGAGCCTGAAGCCCCACTCAGCCTCAGTTCACAACTTTCAGGAGGAATTTGACCT
AGATCAGACCCAGGCTCTTGCCATCAGTGACCATTTTCCTGTGGAAGTGACTTTCAAGACTCACTGA

Translation (278 aa):
MGWPWAPLTAVWALGVMGATALRIGAFNVQSFGDNKVSDPDCGSVIAQILAGYDIALVQEVRDPDLSAVS
LLMEQINRVSKHEYGFVSSKPLGRDQYKEMYLFVYRKDVASVVSTYQYPDPEDAFSREPFVVKFSVPSCA
TKELVLIPLHAAPHQAVAEIDALYDVYLDVIDKWNTDDMLFLGDFNADCKYVKAHDWPSIRLRSSEVFKW
LIPDSADTTVGNSDCAYDRIVVSGAHLRRSLKPHSASVHNFQEEFDLDQTQALAISDHFPVEVTFKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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