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Report for CCDS37418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37418.1 Public Mus musculus 16 Zbtb21 23 108 98 CCDS HistoryNCBI Gene:114565Re-query CCDS DB by CCDS ID:37418.1Re-query CCDS DB by GeneID:114565See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113734.8 ENSMUSP00000109363.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113734.8Link to Ensembl Protein Viewer:ENSMUSP00000109363.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113734Re-query CCDS DB by Protein ID:ENSMUSP00000109363
Original member Current member NCBI NM_175428.4 NP_780637.2 Accepted alive Link to Nucleotide Sequence:NM_175428.4Link to Protein Sequence:NP_780637.2Re-query CCDS DB by Nucleotide ID:NM_175428Re-query CCDS DB by Protein ID:NP_780637Link to BLAST:NP_780637.2

Chromosomal Locations for CCDS 37418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97949881 97953093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97956758 97956829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3285 nt):
ATGATGCACAGTGTACAGCGGGCTCACAAACACTCGGGAGAGGAAGAGAGAAGAAAGATGTGTGCTTGCC
AGATAAAGTGCAGGATGGAGGGACTGCTGCATTACATCAACCCAGCACATGCTATCTCTCTGCTCAGTGC
CCTCAATGAGGAGCGCCTCAAGGGACAGCTGTGTGACGTGCTCCTGATTGTTGGGGACCAGAAATTCCGA
GCTCATAAGAACGTCTTGGCTGCCAGCAGTGAGTACTTCCAGAGTTTATTCACGAATAAGGAGAACGAGG
CACAGACTGTCTTTCAGCTGGACTTCTGTGAGCCTGACGCTTTTGACAACGTTCTGAACTACATTTACTC
TTCTTCCCTTTTTGTGGAGAAGGGCAGCCTTGCTGCTGTGCAGGAGCTGGGGTATAGCCTTGGTATCTCC
TTCCTGACCAACATCGTTGCCAAAGCCCCTCAGGCTCCTTTTCCAGCCTGTCCCAACAGGAAAAGAGTGC
CAGTGGAAGATGATGAAACCAGCTCTCAAAAGCGAAGTGTCATTGTGTGTCAGGGCAGAAGTGAAGTGCC
AGGGAAAGCCAGTGGTCCAGCCATGCAGGACCTCAGCCATACTGCCCGGGCCTCCCCCAGTGCTTCAGTC
AAGACCACCATCAGTAAGCCACATGTGGCCAAGCCGCCAGAGCAGCTTCATAGTCTGCCCTTAACTGAAA
AGAGCTGGACAAAGGATAGTGCTGCAGTATATGCAAAGTCTCTGGAACAGGCTGGGGCTTTGGATGATCC
TAATAGGGGCAGTTTGGTAAAGAGAAATACAGTCCTGCCCCCAAAGCCTTCACAGGACAGGGAGGCCACA
GATGATAAACCAGGGGTGAGCAGCCAGCTTCCCAAGGGGAAAGCTATAGAGCTGGCTCTGAAGAGACCAC
GGCCCCCTGTTCTGTCTCTTCATAGCTCATCAGAGACTCCATATCTCCTAAAAGAAACTAGCAAAGGAGG
CGGTCAGGGAGAGGATAGGAACTTGCTCTACTACTCTAAGCTAGGGCTGGTGGTCCCTTCTGGTGGGCCT
GCTTCTGCAAACCAGAGCATTGACAGAAGTGGCCCACTAGTGAAAAGCCTCCTCAGGCGGTCACTGTCTA
TGGACAGCCAGGTTCCTGTTTACTCCCCCTCCATAGATTTGAAGTCATCCCAGGGATCATCCACAGCGGC
AAATGAGGCACCGGGTAGTGTGTTCTGTTCGATGTCTCAAAAGTCATCTTTAAAAGATTGCAGTGAAAAA
AAAGCTCTGGATGACAGGCCTCAAGTGCTCCAGCCTCATCGCCTCAGGTCCTTTAGTGCTTCCCAGTCAA
CAGACAGGGAGGAAGCCTCCCCTGTGACTGAGGTACGCATTAAGACGGAACCCAGCAGCCCACTGTCAGA
CCCCTCAGACATCATCCGGGTCACTGTGGGAGGAGACGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA
GCAGCAGCTACGAGAGACCTGCCCCTCAAAACAGAGGAAGACCAGAGAGATATGAGCAGACTCCCAGCAA
AGAGAAGGTTCCAGACAGACAGAAGGTCACCCTTGAAGAAGGCAAAGGCAAATGAACACGGGCCTGCTGT
CTCAGAAGAGAACTGTGAAGAGGGCAGGAGCCCTCCTTCCCTTGACAGCAACTTCCCAGATTCTGACTTA
AACAGAGAGGAGTTTGGTGAGTTGGAGGGGACGAGACCAAACAAAAAATTTAAATGCAAACATTGCCTTA
AGATTTTTAGATCAACTGCGGGTCTTCACCGCCATGTTAACATGTACCATAACCCAGAGAAGCCTTACGC
TTGTGACATCTGTCACAAGAGGTTTCACACCAACTTCAAAGTGTGGACACACTGTCAGACCCAACACGGC
ATAGTGAAGAACCCATCGCCAGCCTCTAGTTCCCATGCAGTTTTGGATGAGAAATTCCAAAGAAAGCTGA
TTGACATAGTGAGAGAGAGGGAGATTAAGAAGGCCCTGATCATTAAGCTGAGGCGCAGCAAGCCTGGCTT
CCAGGGACAGAGTAGCTCCCCAGCACAGCAAGTCATCAAGAGGAACTTGCGCTCCCGAGCCAAAGGGGCC
TACATTTGTGCCTACTGTGGCAAGGCATACCGCTTTCTCTCTCAGTTTAAGCAGCACATAAAGATGCACC
CAGGAGAGAGGCCCCTCGGAGTAAGCAGAGCTGCTAAGCCAAAAGAGCGGGCTCTGGCACGCGCGGTAGA
GAACAAGGAGGTTTACCCGTGCCGCCTCTGTAATGCTAAGCTCTCTTCTCTTCTAGAGCAAGGCAACCAC
GAGCGCTTGTGCCGGAACGCCACCGTTTGCCCTTACTGCAGCCTCAGGTTCTTCTCTCCCGCACTGAAGC
AGGAACATGAGGACAGGTGTGAGTACAAAAAGCTGACTTGCCTGGAGTGCATGCGCACCTTCAAGTCCTC
CTTCAGCATCTGGCGGCACCAGGTAGAAGTGCATAACCAGAACAACATGGCTTTAGCAGAGAACTTCGCC
CTGGCCACCCTGGACCACAACGGTGAAGTGGCAGCCGCTTCCAGGCCTCAGACTGAGCCCAGCAAGGTAA
ACCATGTGGCCACTCCAAAAGAGGATACAGCATTTAGCGACTCTTCAGAGCAAGTGAACTTTGATTCTGA
GGATTCCTCCTGCCTCCCTGAAGACTTGAGTCTTTCAAAGCAACTGAAAGTCCAAGTCAAAGAGGAGCCT
GTGGAGGAGGCAGAGGAGGAGGCTCCTGAGGCTAGTGCAGCTCCCAGGGAGGCTGGCCCCAGCAAGGAGA
CCGGCCTATGGCCCTGTGAGAAATGCGGAAAGATGTTCACGGCACACAAGCAGCTGGAGCGGCACCAGGA
GCTGCTGTGTTCTGTGAAGCCCTTCATCTGCCACGTATGCTACAAAGCCTTCCGTACCAACTTCCGACTC
TGGAGTCACTTCCAGACCCACATGTCTCAGGCTACAGAGGAGCCTGTGCAGAAAGAATCAGAGGTGTGTC
CTGTGCCCACAAACTCCCCCTCCCCACCACCTCTGCCACCTCCGCCACCCTTGCCCAAGATTCAGCCCCT
GGAGCCAGACAGCCCCACAGGCCTGCCTGAGAACCCAACCCCAGCTACAGAGAAGCTGTTTGCACCCCAG
GAGTCAGATACCCTCTTCTACCACGCCCCACCCCTTTCAGCAATCACATTTAAAAGACAGTTCATGTGCA
AGCTCTGCCATAGGACATTCAAGACGGCCTTCAGTCTTTGGAGTCATGAGCAGACACACAATTAA

Translation (1094 aa):
MMHSVQRAHKHSGEEERRKMCACQIKCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFR
AHKNVLAASSEYFQSLFTNKENEAQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGIS
FLTNIVAKAPQAPFPACPNRKRVPVEDDETSSQKRSVIVCQGRSEVPGKASGPAMQDLSHTARASPSASV
KTTISKPHVAKPPEQLHSLPLTEKSWTKDSAAVYAKSLEQAGALDDPNRGSLVKRNTVLPPKPSQDREAT
DDKPGVSSQLPKGKAIELALKRPRPPVLSLHSSSETPYLLKETSKGGGQGEDRNLLYYSKLGLVVPSGGP
ASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCSMSQKSSLKDCSEK
KALDDRPQVLQPHRLRSFSASQSTDREEASPVTEVRIKTEPSSPLSDPSDIIRVTVGGDAAAAAVAAAAA
AAATRDLPLKTEEDQRDMSRLPAKRRFQTDRRSPLKKAKANEHGPAVSEENCEEGRSPPSLDSNFPDSDL
NREEFGELEGTRPNKKFKCKHCLKIFRSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHG
IVKNPSPASSSHAVLDEKFQRKLIDIVREREIKKALIIKLRRSKPGFQGQSSSPAQQVIKRNLRSRAKGA
YICAYCGKAYRFLSQFKQHIKMHPGERPLGVSRAAKPKERALARAVENKEVYPCRLCNAKLSSLLEQGNH
ERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMALAENFA
LATLDHNGEVAAASRPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSKQLKVQVKEEP
VEEAEEEAPEASAAPREAGPSKETGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVCYKAFRTNFRL
WSHFQTHMSQATEEPVQKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPTPATEKLFAPQ
ESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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