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Report for CCDS37335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37335.1 Public Mus musculus 16 Eaf2 23 108 98 CCDS HistoryNCBI Gene:106389Re-query CCDS DB by CCDS ID:37335.1Re-query CCDS DB by GeneID:106389See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075946.11 ENSMUSP00000075331.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075946.11Link to Ensembl Protein Viewer:ENSMUSP00000075331.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075946Re-query CCDS DB by Protein ID:ENSMUSP00000075331
Original member Current member EBI ENSMUST00000114825.2 ENSMUSP00000110473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114825.2Link to Ensembl Protein Viewer:ENSMUSP00000110473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114825Re-query CCDS DB by Protein ID:ENSMUSP00000110473
Original member Current member NCBI NM_001113405.1 NP_001106876.1 Accepted alive Link to Nucleotide Sequence:NM_001113405.1Link to Protein Sequence:NP_001106876.1Re-query CCDS DB by Nucleotide ID:NM_001113405Re-query CCDS DB by Protein ID:NP_001106876Link to BLAST:NP_001106876.1
Original member Current member NCBI NM_001358102.1 NP_001345031.1 Accepted alive Link to Nucleotide Sequence:NM_001358102.1Link to Protein Sequence:NP_001345031.1Re-query CCDS DB by Nucleotide ID:NM_001358102Re-query CCDS DB by Protein ID:NP_001345031Link to BLAST:NP_001345031.1
Original member Current member NCBI NM_134111.2 NP_598872.1 Accepted alive Link to Nucleotide Sequence:NM_134111.2Link to Protein Sequence:NP_598872.1Re-query CCDS DB by Nucleotide ID:NM_134111Re-query CCDS DB by Protein ID:NP_598872Link to BLAST:NP_598872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106876.1 132 Q91ZD6-2 132 100% 0 0
NP_001345031.1 132 Q91ZD6-2 132 100% 0 0
NP_598872.1 132 Q91ZD6-2 132 100% 0 0

Chromosomal Locations for CCDS 37335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36793880 36793926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36800587 36800844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36808015 36808108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGTGGAATCTGCCTAGGACTTCCAATCTTGTACAGCATTCTCCATCAGAAGAGAAGATGTCTCCAACGT
CTCTAATGGATGATATTGAAAGAGAACTGAAAGCAGAAGCTAGTCTTATGGACCAGATGAGTAGTTGTGA
TAGTTCATCAGATTCCAAAAGTTCTTCATCTTCAAGTAGTGAGGATAGTTCTAGTGATTCTGAAGATGAT
GACCAATTCTCTCCTTTGGGTCCAAGGAAATACAGCTCGGAGCACCCTAGCATGTCTGCTGGGCCACAGT
ACAGGACTTCAGAGGCTGATGCTACTTGTCACCGACTTCAGGACCACAGTACCCTTCTGATGAGTACTTT
ACGAAGTGACTTGCAGCTGAGTGAGTCAGAAAGCGACAGTGAGGACTGA

Translation (132 aa):
MWNLPRTSNLVQHSPSEEKMSPTSLMDDIERELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDD
DQFSPLGPRKYSSEHPSMSAGPQYRTSEADATCHRLQDHSTLLMSTLRSDLQLSESESDSED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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